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Table 2 Statistics of MinION sequencing data

From: MinION, a portable long-read sequencer, enables rapid vaginal microbiota analysis in a clinical setting

Sample Pass reads Filtered reads
No. of reads Min (bp) Avg (bp) Max (bp) No. of reads Avg (bp)
1_lavage_V1-9 115,957 128 1434.3 4377 91,449 (78.9%) 1633.5
1_swab_V1-9 63,547 155 1078.0 4193 31,462 (49.5%) 1619.3
2_lavage_V1-9 33,721 158 1507.2 4486 28,718 (85.2%) 1607.0
2_swab_V1-9 53,584 145 1203.6 3746 33,294 (62.1%) 1613.6
3_lavage_V1-9 28,071 154 1396.3 4875 20,958 (74.7%) 1613.8
3_swab_V1-9 23,053 162 1521.0 3990 20,073 (87.1%) 1614.5
4_lavage_V1-9 30,603 155 1502.9 4977 25,756 (84.2%) 1639.5
4_swab_V1-9 37,597 161 1103.2 3383 19,588 (52.1%) 1644.9
5_lavage_V1-9 15,836 147 1346.1 3393 10,688 (67.5%) 1632.8
6_lavage_V1-9 38,020 144 1517.2 3787 32,255 (84.8%) 1642.4
7_lavage_V1-9 61,432 158 1218.8 5035 37,018 (60.3%) 1631.4
8_lavage_V1-9 52,071 111 1257.5 3344 33,906 (65.1%) 1603.2
9_lavage_V1-9 119,745 125 1530.5 4664 103,212 (86.2%) 1649.4
10_lavage_V1-9 102,333 150 1496.5 4980 84,028 (82.1%) 1650.2
11_lavage_V1-9 61,756 121 1541.3 3519 54,116 (87.6%) 1647.8
12_lavage_V1-9 101,755 120 1433.9 4759 77,756 (76.4%) 1635.8
13_lavage_V1-9 71,041 134 1437.5 4828 56,601 (79.7%) 1599.2
14_lavage_V1-9 42,629 159 1367.7 4981 31,447 (73.8%) 1629.0
15_lavage_V1-9 52,908 172 1452.9 3333 42,910 (81.1%) 1630.4
16_lavage_V1-9 52,230 153 1480.3 4345 43,549 (83.4%) 1633.0
17_lavage_V1-9 38,219 154 1478.3 3453 31,757 (83.1%) 1625.3
18_lavage_V1-9 28,886 185 1464.7 3328 23,816 (82.4%) 1631.8
5_lavage_V3-4 74,096 147 589.5 3038 29,505 (39.8%) 574.8
6_lavage_V3-4 83,983 141 586.1 2099 33,677 (40.1%) 571.8
9_lavage_V3-4 49,642 148 588.2 2275 21,614 (43.5%) 574.2
10_lavage_V3-4 65,561 139 587.2 2873 28,440 (43.4%) 574.5
11_lavage_V3-4 98,126 124 587.4 2568 40,485 (41.3%) 571.7
14_lavage_V3-4 79,631 127 584.9 1,849 35,009 (44.0%) 571.2
  1. Min minimum read length, Avg average read length, Max maximum read length. The reads were filtered by size, retaining 1300–1950 bp sequences for the V1–9 region and 350–600 bp sequences for the V3–4 region