|
Sample
|
Pass reads
|
Filtered reads
|
|---|
|
No. of reads
|
Min (bp)
|
Avg (bp)
|
Max (bp)
|
No. of reads
|
Avg (bp)
|
|---|
|
1_lavage_V1-9
|
115,957
|
128
|
1434.3
|
4377
|
91,449 (78.9%)
|
1633.5
|
|
1_swab_V1-9
|
63,547
|
155
|
1078.0
|
4193
|
31,462 (49.5%)
|
1619.3
|
|
2_lavage_V1-9
|
33,721
|
158
|
1507.2
|
4486
|
28,718 (85.2%)
|
1607.0
|
|
2_swab_V1-9
|
53,584
|
145
|
1203.6
|
3746
|
33,294 (62.1%)
|
1613.6
|
|
3_lavage_V1-9
|
28,071
|
154
|
1396.3
|
4875
|
20,958 (74.7%)
|
1613.8
|
|
3_swab_V1-9
|
23,053
|
162
|
1521.0
|
3990
|
20,073 (87.1%)
|
1614.5
|
|
4_lavage_V1-9
|
30,603
|
155
|
1502.9
|
4977
|
25,756 (84.2%)
|
1639.5
|
|
4_swab_V1-9
|
37,597
|
161
|
1103.2
|
3383
|
19,588 (52.1%)
|
1644.9
|
|
5_lavage_V1-9
|
15,836
|
147
|
1346.1
|
3393
|
10,688 (67.5%)
|
1632.8
|
|
6_lavage_V1-9
|
38,020
|
144
|
1517.2
|
3787
|
32,255 (84.8%)
|
1642.4
|
|
7_lavage_V1-9
|
61,432
|
158
|
1218.8
|
5035
|
37,018 (60.3%)
|
1631.4
|
|
8_lavage_V1-9
|
52,071
|
111
|
1257.5
|
3344
|
33,906 (65.1%)
|
1603.2
|
|
9_lavage_V1-9
|
119,745
|
125
|
1530.5
|
4664
|
103,212 (86.2%)
|
1649.4
|
|
10_lavage_V1-9
|
102,333
|
150
|
1496.5
|
4980
|
84,028 (82.1%)
|
1650.2
|
|
11_lavage_V1-9
|
61,756
|
121
|
1541.3
|
3519
|
54,116 (87.6%)
|
1647.8
|
|
12_lavage_V1-9
|
101,755
|
120
|
1433.9
|
4759
|
77,756 (76.4%)
|
1635.8
|
|
13_lavage_V1-9
|
71,041
|
134
|
1437.5
|
4828
|
56,601 (79.7%)
|
1599.2
|
|
14_lavage_V1-9
|
42,629
|
159
|
1367.7
|
4981
|
31,447 (73.8%)
|
1629.0
|
|
15_lavage_V1-9
|
52,908
|
172
|
1452.9
|
3333
|
42,910 (81.1%)
|
1630.4
|
|
16_lavage_V1-9
|
52,230
|
153
|
1480.3
|
4345
|
43,549 (83.4%)
|
1633.0
|
|
17_lavage_V1-9
|
38,219
|
154
|
1478.3
|
3453
|
31,757 (83.1%)
|
1625.3
|
|
18_lavage_V1-9
|
28,886
|
185
|
1464.7
|
3328
|
23,816 (82.4%)
|
1631.8
|
|
5_lavage_V3-4
|
74,096
|
147
|
589.5
|
3038
|
29,505 (39.8%)
|
574.8
|
|
6_lavage_V3-4
|
83,983
|
141
|
586.1
|
2099
|
33,677 (40.1%)
|
571.8
|
|
9_lavage_V3-4
|
49,642
|
148
|
588.2
|
2275
|
21,614 (43.5%)
|
574.2
|
|
10_lavage_V3-4
|
65,561
|
139
|
587.2
|
2873
|
28,440 (43.4%)
|
574.5
|
|
11_lavage_V3-4
|
98,126
|
124
|
587.4
|
2568
|
40,485 (41.3%)
|
571.7
|
|
14_lavage_V3-4
|
79,631
|
127
|
584.9
|
1,849
|
35,009 (44.0%)
|
571.2
|
- Min minimum read length, Avg average read length, Max maximum read length. The reads were filtered by size, retaining 1300–1950 bp sequences for the V1–9 region and 350–600 bp sequences for the V3–4 region
