Table 2 Statistics of MinION sequencing data
Sample | Pass reads | Filtered reads | ||||
|---|---|---|---|---|---|---|
No. of reads | Min (bp) | Avg (bp) | Max (bp) | No. of reads | Avg (bp) | |
1_lavage_V1-9 | 115,957 | 128 | 1434.3 | 4377 | 91,449 (78.9%) | 1633.5 |
1_swab_V1-9 | 63,547 | 155 | 1078.0 | 4193 | 31,462 (49.5%) | 1619.3 |
2_lavage_V1-9 | 33,721 | 158 | 1507.2 | 4486 | 28,718 (85.2%) | 1607.0 |
2_swab_V1-9 | 53,584 | 145 | 1203.6 | 3746 | 33,294 (62.1%) | 1613.6 |
3_lavage_V1-9 | 28,071 | 154 | 1396.3 | 4875 | 20,958 (74.7%) | 1613.8 |
3_swab_V1-9 | 23,053 | 162 | 1521.0 | 3990 | 20,073 (87.1%) | 1614.5 |
4_lavage_V1-9 | 30,603 | 155 | 1502.9 | 4977 | 25,756 (84.2%) | 1639.5 |
4_swab_V1-9 | 37,597 | 161 | 1103.2 | 3383 | 19,588 (52.1%) | 1644.9 |
5_lavage_V1-9 | 15,836 | 147 | 1346.1 | 3393 | 10,688 (67.5%) | 1632.8 |
6_lavage_V1-9 | 38,020 | 144 | 1517.2 | 3787 | 32,255 (84.8%) | 1642.4 |
7_lavage_V1-9 | 61,432 | 158 | 1218.8 | 5035 | 37,018 (60.3%) | 1631.4 |
8_lavage_V1-9 | 52,071 | 111 | 1257.5 | 3344 | 33,906 (65.1%) | 1603.2 |
9_lavage_V1-9 | 119,745 | 125 | 1530.5 | 4664 | 103,212 (86.2%) | 1649.4 |
10_lavage_V1-9 | 102,333 | 150 | 1496.5 | 4980 | 84,028 (82.1%) | 1650.2 |
11_lavage_V1-9 | 61,756 | 121 | 1541.3 | 3519 | 54,116 (87.6%) | 1647.8 |
12_lavage_V1-9 | 101,755 | 120 | 1433.9 | 4759 | 77,756 (76.4%) | 1635.8 |
13_lavage_V1-9 | 71,041 | 134 | 1437.5 | 4828 | 56,601 (79.7%) | 1599.2 |
14_lavage_V1-9 | 42,629 | 159 | 1367.7 | 4981 | 31,447 (73.8%) | 1629.0 |
15_lavage_V1-9 | 52,908 | 172 | 1452.9 | 3333 | 42,910 (81.1%) | 1630.4 |
16_lavage_V1-9 | 52,230 | 153 | 1480.3 | 4345 | 43,549 (83.4%) | 1633.0 |
17_lavage_V1-9 | 38,219 | 154 | 1478.3 | 3453 | 31,757 (83.1%) | 1625.3 |
18_lavage_V1-9 | 28,886 | 185 | 1464.7 | 3328 | 23,816 (82.4%) | 1631.8 |
5_lavage_V3-4 | 74,096 | 147 | 589.5 | 3038 | 29,505 (39.8%) | 574.8 |
6_lavage_V3-4 | 83,983 | 141 | 586.1 | 2099 | 33,677 (40.1%) | 571.8 |
9_lavage_V3-4 | 49,642 | 148 | 588.2 | 2275 | 21,614 (43.5%) | 574.2 |
10_lavage_V3-4 | 65,561 | 139 | 587.2 | 2873 | 28,440 (43.4%) | 574.5 |
11_lavage_V3-4 | 98,126 | 124 | 587.4 | 2568 | 40,485 (41.3%) | 571.7 |
14_lavage_V3-4 | 79,631 | 127 | 584.9 | 1,849 | 35,009 (44.0%) | 571.2 |