Table 2 Mapped tumor sites for the used public database with the Oncotree model
Origin | Sub | NCCN | COSMIC | intOgen | cBioPortal | OncoKB |
|---|---|---|---|---|---|---|
Breast | breast | breast | breast | BRCA | ACBC, BLPT, BPT, BRCA, BRCNOS, BREAST, DCIS, IDC, ILC, IMMC, MBC, MDLC, MPT, PD, SPC | Breast Cancer |
Bowel | anal | anal | large_intestine > SS1 = anus | COREAD | NA | Colorectal Cancer |
Bowel | rectal | rectal | large_intestine > SS1 = rectum | COREAD | READ, COADREAD | Colorectal Cancer |
Bowel | colon | colon | large_intestine > SS1 = colon | COREAD | COAD, MACR, COADREAD | Colorectal Cancer |
CNS or Brain | cns | cns | central_nervous_system | GBM, LGG, MB, NB, PA | AASTR, AOAST, AODG, ASTR, DIFG, GB, GBM, LGGNOS, MBL, OAST, ODG | CNS Cancer, Glioma, Embryonal Tumor |
Esophagus or Stomach | esophageal | esophageal | oesophagus | ESCA | ESCC, ESCA, STES | Esophagogastric Cancer |
Esophagus or Stomach | gastric | gastric | stomach | STAD | DSTAD, ESCA, ISTAD, MSTAD, STAD, STOMACH, TSTAD | Esophagogastric Cancer |
Skin | melanoma | melanoma | PH = malignant_melanoma | CM | ACRM, DESM, MEL, SKCM, SKLMM | Melanoma |
Pancreas | pancreas | pancreas | pancreas | PAAD | IPMN, MCN, PAAD | NA |
Lung | nsclc | nsclc | lung > HS1 = non_small_cell_carcinoma | NSCLC | LUAD, LUSC, NSCLC | Non-Small Cell Lung Cancer, Lung Squamous Cell Carcinoma |
Lung | sclc | sclc | lung > HS1 = small_cell_carcinoma | SCLC | NA | NA |