Identifying intragenic functional modules of genomic variations associated with cancer phenotypes by learning representation of association networks

Table 2 Reproducibility test results with a p value threshold of 0.05

Approaches	#_of_module_candidates	p_R < 0.05	Ratio	p_E < 0.05	Ratio
LCW-SG	20,045	517	0.0258	59	0.1141
GMF-NMF	14,985	1,728	0.1153	257	0.1487
GMF-PCA	20,369	2,465	0.1210	342	0.1387
CTRL-GLA	5,270	67	0.0127	4	0.0597
CTRL-INV	1,887,981	305,106	0.1616	188,369	0.6174

ISSN: 1755-8794