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Table 2 Description of data properties and related object properties

From: PO2RDF: representation of real-world data for precision oncology using resource description framework

Class

Data property

Related object property

Patient

Patient_ID, Date_of_Birth, Race, Ethnicity, Sex, Death

HasMutGene, HasVariant, HasDisease, TreatedBy

Gene

Gene_Name, UMLS_CUI, OMIM_ID, CIViC_Gene_ID, OncoKB_Gene_ID, PharmGKB_Gene_ID

AssociatedWithGene, AssociatedWithVariant, MayTargetedBy

Variant

Var_Name, UMLS_CUI, ClinVar_ID, dbSNP_ID, CIViC_Var_ID, OncoKB_Var_ID,

AssociatedWithVariant

Disease

Disease_Name, UMLS_CUI, OMIM_ID, CIViC_DOID, OncoKB_Disease_ID, PharmGKB_Disease_ID, Stage_At_Diagnosis

AssociatedWithGene, MayTreatedBy, HasContraindicationWith

Drug

Drug_Name, Brand_Name, Drug_Category, UMLS_CUI, NUI (NDF-RT Unique Identifier), CIViC_Drug_ID, OncoKB_Drug_ID, PharmGKB_Drug_ID

MayTreatedBy, HasContraindicationWith, MayTargetedBy