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Congenital myasthenic syndrome secondary to pathogenic variants in the SLC5A7 gene: report of two cases

Abstract

Background

Congenital Myasthenic Syndromes (CMS) are rare genetic diseases, which share as a common denominator muscle fatigability due to failure of neuromuscular transmission. A distinctive clinical feature of presynaptic CMS variants caused by defects of the synthesis of acetylcholine is the association with life-threatening episodes of apnea. One of these variants is caused by mutations in the SLC5A7 gene, which encodes the sodium-dependent HC-3 high-affinity choline transporter 1 (CHT1). To our knowledge there are no published cases of this CMS type in Latin America.

Case presentation

We present two cases of CHT1-CMS. Both patients were males presenting with repeated episodes of apnea, hypotonia, weakness, ptosis, mild ophthalmoparesis, and bulbar deficit. The first case also presented one isolated seizure, while the second case showed global developmental delay. Both cases, exhibited incomplete improvement with treatment with pyridostigmine.

Conclusions

This report emphasizes the broad incidence of CMS with episodic apnea caused by mutations in the SLC5A7 gene and the frequent association of this condition with serious manifestations of central nervous system involvement.

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Background

Congenital Myasthenic Syndromes (CMS) are a complex group of diseases in which the function of the neuromuscular junction (NMJ) is altered by one or multiple mechanisms, causing muscle weakness and fatigability. Most often, symptoms appear early in life, at birth or even prenatally [1, 2]; however, the clinical manifestations of CMS can start at any time in life. These diseases are caused by defects of genes encoding various proteins that are essential for neuromuscular transmission.

From the first complete description to present, mutations in more than 30 genes have been found to associate with the pathogenesis of CMS [3, 4]. Although CMS are infrequent diseases, they have been reported worldwide [1, 2]. According to the location of the protein encoded by the defective gene, CMS are classified as presynaptic, synaptic, and postsynaptic types with additional variants that involve all three compartments [2]. Postsynaptic forms due to mutations in genes transcribing the adult subunits of the acetylcholine receptor are the most frequent types of CMS [2].

Although all CMS share in varied degree the clinical characteristics described above, those affecting the synthesis of acetylcholine (ACh) have a particular phenotype characterized by recurrent episodes of apnea. These variants correspond to 6–7% of all CMS types [2] and can result from mutations in the genes encoding the choline acetyltransferase (CHAT) [5], the vesicular ACh transporter (VAChT) (SLC18A3) [6], and the sodium-dependent HC-3 high-affinity choline transporter 1 (CHT1) (SLC5A7) [7]. While the CMS caused by mutations in CHAT is the most common variant of this subtype of CMS, in recent years, several authors have reported mutations in SLC5A7 as another frequent cause of CMS with episodic apneas [7,8,9,10,11].

The translation product of SLC5A7 is the CHT1, which is responsible for choline reuptake in the presynaptic terminal after the cleavage of ACh by the enzyme acetylcholinesterase in the synaptic cleft [10, 11]. There are also dominant mutations of this gene causing type VII hereditary distal motor neuropathy, which has different clinical manifestations than those in patients with CMS with episodic apnea [12]. We describe here the first two cases of CMS with episodic apnea caused by mutations in the SLC5A7 gene in Latin America and emphasize the frequent association of this genetic disorder with serious manifestations of central nervous system (CNS) involvement.

Case presentation

This study was approved by the Ethical Committee of the Hospital Italiano. Signed consents to participate and for publication of the case reports and images were obtained from the legal representatives of all the participants.

Case 1

This male patient, who is currently a 36-month-old, was the first child of a healthy non-consanguineous couple, of Polish and Spanish ancestry. The pregnancy was uncomplicated, but the delivery was performed at term by cesarean section because of the finding of a dilated middle cerebral artery by doppler ultrasound. At birth his Apgar score was normal, he had no joint contractures, and his weight was adequate for gestational age. In the first hour of life, he presented an episode of apnea with generalized cyanosis, which resolved with the administration of supplemental oxygen by nasal cannula. At 6 h, he presented a paroxysmal event characterized by myoclonic jerks of the right hemi-body, interpreted as a possible seizure, which spontaneously resolved. He was transferred to the neonatal intensive care unit (NICU) for continued care. During hospitalization, bilateral ptosis, hypotonia, weakness, laryngeal stridor, dysphonic crying, and weak sucking were observed. An EMG was performed and revealed 13% decrement of compound muscle action potential amplitudes during stimulation of the ulnar nerve at 2 Hz. An EEG and a brain MRI were both normal. After 21 days he was discharged, but readmitted 24 h later, due to an episode of apnea associated with feeding. In the NICU he presented 5 additional episodes requiring the insertion of an orogastric tube. Blood collection for a whole exome sequencing (WES) was completed, and the patient was discharged home.

At 2 months of age, he presented respiratory arrest, for which he was admitted to the pediatric intensive care unit (PICU) and required tracheostomy with prolonged mechanical ventilation.

The WES analysis informed two unreported heterozygous variants in the SLC5A7 gene (NM_021815.5:c) associated with CMS. One variant was c.178 + 2T > C considered pathogenic by the Mutation Taster and Human Splicing Finder software [13, 14]. The other variant c.1448 C > T, p.Ala483Val, was considered pathogenic by CADD, MutationAssessor, and MutationTaster, but tolerated by Polyphen2-HVAR, and SIFT (Table 1).

Table 1 Genetic studies and clinical features

With the tentative diagnosis of CMS, treatment with pyridostigmine 5 mg every 4 h was started, with good clinical response. The patient is now 3-year-old and displays only mild hypotonia and occasional divergent strabismus (Fig. 1A).

Fig. 1
figure 1

Clinical features. A. Patient 1 displaying strabismus and compensatory head tilt. B Patient 2 displaying bilateral ptosis

Case 2

The second patient, a male born in Paraguay, was the second child of a healthy non-consanguineous parents. The pregnancy was uncomplicated. He was born at 38 weeks of gestational age, without joint contractures and with a vigorous Apgar score. At 48 h he was discharged from the hospital. A few days following birth, bilateral ptosis, ophthalmoparesis, hypotonia, generalized weakness and significant head lag on traction were observed. He also presented several episodes of apnea throughout his first month of life. This was interpreted as recurrent laryngitis, secondary to gastroesophageal reflux and he underwent Nissen fundoplication surgery. At 3 months, he suffered a respiratory arrest, for which he was admitted to the PICU and required tracheostomy with mechanical ventilation. A muscle biopsy, and a single-fiber electromyography (SFEMG) study were performed in the first year of life. The muscle biopsy showed no diagnostic features, but the SFEMG study showed signs of failure neuromuscular transmission. He has global developmental delay, but he is currently able to communicate using a limited vocabulary. He is able to count single digits and to recognize geometrical figures. However, he is unable to read or write and requires assistance with activities of daily living. Genetic studies were performed, using a comparative genomic hybridization (CGH) microarray, and WES. The CGH demonstrated a microdeletion in chromosome 6q22.32 (Chr6:126241510–126835279), also present in her healthy mother, therefore not considered to be pathogenic. By contrast, the WES demonstrated two unreported pathogenic variants in SLC5A7 (NM_021815.5:c): c.1207T > C, p.Tyr403His, and c.1349G > A, p.Gly450Glu (Table 1; Fig. 2), each one shared with each one of his parents. Both variants were considered likely pathogenic based on CADD scores (CADD 24.7; CADD 32.0).

Fig. 2
figure 2

Schematic view of human CHT1 showing the position of the identified mutations. A. Variants Ala483Val along with the splice junction mutation c.178 + 2T > C (not shown in the drawing) were found in patient 1, while the Tyr403His and Gly450Glu were identified in patient 2. Notice that the three amino acid changes involve transmembrane segments of the CHT1 protein. (modified from reference Haga, 2014). 15B. Alignment of the amino acid sequence of the human CHT1 encompassing the identified mutations (arrowheads) with that of orthologous genes from mammals (horse and Guinea pig), vertebrate (easter brown snake) and insect (fruit fly). Notice that the amino acid sequences are well conserved

Treatment was started with pyridostigmine, with a good but incomplete clinical response. Thus, ephedrine was added but subsequently discontinued due to restlessness. Choline supplement, and donepezil were later added with a clinical improvement of cognitive function. The patient evolved favorably from the respiratory standpoint, but currently presents a global developmental delay, with serious behavioral derangement. Occasional bilateral ptosis has also been observed since initiation of treatment (Fig. 1B).

Discussion and conclusions

We present two cases of presynaptic CMS, caused by pathogenic variants of the SLC5A7 gene. To date, fewer than 15 cases have been identified worldwide, and none of which have been reported in Latin America [11]. The clinical presentation of our patients was characterized by episodes of apnea in the neonatal period, muscle weakness and generalized hypotonia, ptosis, ophthalmoparesis and bulbar symptoms. The first case also presented an episode of focal seizure in the first hours of life, while the second manifested global developmental delay with notable hyperactivity and behavioral disturbance. In both, the etiological diagnosis was achieved through WES, and they exhibited a good, but partial clinical response to treatment with pyridostigmine.

Congenital Myasthenic Syndromes are a rare entity, with an estimated prevalence of 9 to 10 per million [9]. From the pathophysiological point of view, the defect is found in the postsynaptic level in 75% of cases. The rest of the cases correspond 15% to synaptic forms and 6–8% to presynaptic variants [9]. Among the later, CHT1 deficiency due to SLC5A7 gene mutations are in second place in prevalence of presynaptic CMS after ChAT deficiency, which represents about 5% of CMS [16].

At the nerve terminal, CHT1 is responsible for choline reuptake, which is the rate-limiting reaction in the synthesis of ACh [17, 18]. In recent years, a series of pathogenic variants in genes linked to CMS have been reported in pediatric patients with neuromuscular disorders as a primary symptom but also with clinical manifestations of CNS involvement, which expands the definition of what was previously interpreted as CMS [19, 20].

Cholinergic neurotransmission is widely present throughout the entire nervous system, so it is expected that the clinical spectrum of this entity be broad. According to the literature, CHT1 deficiency is characterized by onset in the neonatal period, with hypotonia and generalized weakness, ocular symptoms, bulbar compromise, and episodes of apnea. A large proportion of patients also present epilepsy and different types of cognitive developmental delay. For instance, cognitive deficit was described in 3 out of the 5 patients reported by Bauche et al. [7], and in all of the 4 patients reported by Wang et al. [8]. By contrast seizures were reported in only one of the patients described by Wang et al. [8] and in 2 out 5 patients presented by Rodriguez Cruz et al. [9]. These clinical manifestations may result from hypoxic brain damage caused by repeated apneic episodes or may represent a direct consequence of impaired cholinergic transmission in the CNS. Indeed, since CHT1 is also required for the reuptake of ACh in central neurons that participate in executive functions and behavioral control [18], it is not surprising that deficiency of CHT1 has far-reaching consequences than impaired neuromuscular transmission.

Episodes of apnea are always serious because they place the lives of patients at risk. The cases reported to date illustrate the morbidity associated with these events, since most patients require invasive ventilatory support and tracheostomy to maintain effective airway control [7, 9, 20].

The diagnostic suspicion of CMS is mainly based on the presence of relevant symptoms and a positive family history. Nevertheless, since all cases of CMS due to SCL5A7 mutations thus far described have been recessively transmitted, there is usually no family history of CMS in these patients. For the same reason, affected children carry two pathogenic variants in SLC5A7, while the parents, who carry only one pathogenic variant, are asymptomatic and do not require electrodiagnostic testing. Electrophysiology studies demonstrating impaired neuromuscular transmission and blood work showing absence of autoantibodies against proteins of the NMJ are useful. However, the key to the diagnosis lies in the finding of pathogenic variants in genes involved in the structure and function of the NMJ, which is usually achieved by performing a WES [1, 2]. The genetic diagnosis is also important to rule out other forms of CMS, such as those caused by mutation in genes encoding ChAT, Rapsyn, Agrin and ColQ, which can also result in episodes of apnea.

In the CHT1-CMS acetylcholinesterase inhibitors, such as pyridostigmine, by virtue of increasing the amount of ACh available to interact with the receptor, improve neuromuscular transmission [9, 11], However, in some CMS variants such those resulting from mutations in Agrin and ColQ, pyridostigmine can result in an untoward effect. Moreover, since in CHT1-CM the therapeutic response to pyridostigmine is incomplete, sympathomimetic medications, such as Salbutamol and Ephedrine are often needed to support neuromuscular transmission. For this reason, early genetic diagnosis is essential since therapeutic intervention could improve the morbidity and mortality of the disease. In the case of our patients, after administration of pyridostigmine at adequate doses, improvement was observed in both muscular and respiratory function with resolution of apnea episodes. However, in patient 2, there were no observable changes of the behavior or cognitive functions. Similar findings have been described by other authors, although some have described a partial improvement the behavioral dysfunction [7,8,9, 11]. To explain this phenomenon, it was proposed that the response variability may be due to the severity of the clinical phenotype and the residual CHT1 function, although the latter is not routinely performed in daily clinical practice [10].

Data availability

The DNA sequence data analyzed in this study are available in the ClinVar public archive : https://www.ncbi.nlm.nih.gov/clinvar/: [NM_021815.5(SLC5A7):c.178 +2T>C Variation ID: 2687476 Accession: VCV002687476.1, NM_021815.5(SLC5A7):c.1207T>C (p.Tyr403His) Variation ID: 2687766 Accession: VCV002687766.1, NM_021815.5(SLC5A7):c.1349G>A (p.Gly450Glu) Variation ID: 2687767 Accession: VCV002687767.1, NM_021815.5(SLC5A7):c.1448C>T (p.Ala483Val) Variation ID: 2687475 Accession: VCV002687475.1]

Abbreviations

CMS:

congenital myasthenic syndromes

NMJ:

neuromuscular junction

ACh:

acetylcholine

SLC5A7:

solute carrier 5A7 gene

CHAT:

choline acetyltransferase gene

VAChT:

vesicular acetylcholine transporter

CHT1:

choline transporter 1

WES:

whole-exome sequencing

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Acknowledgements

We want to acknowledge the support that we received from the parents of the patients.

Funding

This work was supported in part by a grant of the Myasthenia Gravis Foundation of America (MGFA) to RAM. Sequencing and data analysis were provided for case 2 by the University of Washington Center for Rare Disease Research (UW-CRDR) with support from NHGRI grants U01 HG011744, UM1 HG006493 and U24 HG011746.

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Authors and Affiliations

Authors

Contributions

Javier A. Muntadas: He identified the patients and conducted the electrodiagnostic evaluation in the second patient. He wrote the paper in conjunction with Martin R. Hyland and Ricardo A. Maselli. Martin R. Hyland: Helped with the identification of the patients and wrote the paper in conjunction with Javier A. Muntadas and Ricado A. Maselli. Maria Del Rosario Ortolá Martínez: Helped with the identification of the patients. Jaime N Young: Deposited the sequence variations in ClinVar and in conjunction with Ricardo A. Maselli edited and submitted the paper. Jessica X Chong: Identified the mutations in patient 2. Michael J Bamshad: Identified the mutations in patient 2. Ricardo A Maselli: Together with Javier Muntadas he made the diagnoses of the patients. He also made the figures, deposited the sequence variations in conjunction with Jaime Young, and wrote the paper together with Javier Muntadas and Martin R. Hyland. All authors read and approved the final manuscript.

Corresponding author

Correspondence to Ricardo A. Maselli.

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This report was reviewed and approved by the Ethical Committee on Human Subjects of the Hospital Italiano. Informed consent to participate was obtained and signed by the legal representatives of all the participants of the study.

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Written informed consent for publication of the case reports and images was obtained from all the legal guardians/parents in the study.

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The authors declare no competing interests.

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Muntadas , J.A., Hyland, M.R., Martínez, M.D.R.O. et al. Congenital myasthenic syndrome secondary to pathogenic variants in the SLC5A7 gene: report of two cases. BMC Med Genomics 17, 207 (2024). https://doi.org/10.1186/s12920-024-01977-6

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