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  1. Both genetic and epigenetic factors influence the development and progression of epithelial ovarian cancer (EOC). However, there is an incomplete understanding of the interrelationship between these factors an...

    Authors: Devin C Koestler, Prabhakar Chalise, Mine S Cicek, Julie M Cunningham, Sebastian Armasu, Melissa C Larson, Jeremy Chien, Matthew Block, Kimberly R Kalli, Thomas A Sellers, Brooke L Fridley and Ellen L Goode
    Citation: BMC Medical Genomics 2014 7:8
  2. The catechol-O-methyltransferase (COMT) enzyme has been widely studied due to its multiple roles in neurological functioning, estrogen biology, and methylation metabolic pathways. Numerous studies have investigat...

    Authors: Theresa Swift-Scanlan, Christopher T Smith, Sabrina A Bardowell and Charlotte A Boettiger
    Citation: BMC Medical Genomics 2014 7:5
  3. High-grade osteosarcoma is a primary malignant bone tumor mostly occurring in adolescents and young adults, with a second peak at middle age. Overall survival is approximately 60%, and has not significantly in...

    Authors: Marieke L Kuijjer, Brendy EWM van den Akker, Riet Hilhorst, Monique Mommersteeg, Emilie P Buddingh, Massimo Serra, Horst Bürger, Pancras CW Hogendoorn and Anne-Marie Cleton-Jansen
    Citation: BMC Medical Genomics 2014 7:4
  4. The purpose of this paper is to describe the data collection efforts and validation of PhenX measures in the Personalized Medicine Research Project (PMRP) cohort.

    Authors: Catherine A McCarty, Richard Berg, Carla M Rottscheit, Carol J Waudby, Terrie Kitchner, Murray Brilliant and Marylyn D Ritchie
    Citation: BMC Medical Genomics 2014 7:3
  5. To gain biological insights into lung metastases from hepatocellular carcinoma (HCC), we compared the whole-genome sequencing profiles of primary HCC and paired lung metastases.

    Authors: Limei Ouyang, Jeeyun Lee, Cheol-Keun Park, Mao Mao, Yujian Shi, Zhuolin Gong, Hancheng Zheng, Yingrui Li, Yonggang Zhao, Guangbiao Wang, Huiling Fu, Jhingook Kim and Ho Yeong Lim
    Citation: BMC Medical Genomics 2014 7:2
  6. Non-invasive prenatal testing of trisomy 21 (T21) is being actively investigated using fetal-specific epigenetic markers (EPs) that are present in maternal plasma. Recently, 12 EPs on chromosome 21 were identi...

    Authors: Ji Hyae Lim, Da Eun Lee, So Yeon Park, Do Jin Kim, Hyun Kyong Ahn, You Jung Han, Moon Young Kim and Hyun Mee Ryu
    Citation: BMC Medical Genomics 2014 7:1
  7. The presence of an extra whole or part of chromosome 21 in people with Down syndrome (DS) is associated with multiple neurological changes, including pathological aging that often meets the criteria for Alzhei...

    Authors: Meaghan J Jones, Pau Farré, Lisa M McEwen, Julia L MacIsaac, Kim Watt, Sarah M Neumann, Eldon Emberly, Max S Cynader, Naznin Virji-Babul and Michael S Kobor
    Citation: BMC Medical Genomics 2013 6:58
  8. Authors: Mengjun Wang, Anand Mehta, Timothy M Block, Jorge Marrero, Adrian M Di Bisceglie and Karthik Devarajan
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S11

    This article is part of a Supplement: Volume 6 Supplement 3

    The original article was published in BMC Medical Genomics 2013 6:S9

  9. The identification of genes involved in human complex diseases remains a great challenge in computational systems biology. Although methods have been developed to use disease phenotypic similarities with a pro...

    Authors: Yong Chen, Xuebing Wu and Rui Jiang
    Citation: BMC Medical Genomics 2013 6:57
  10. To investigate associations between WW domain-containing oxidoreductase (WWOX), runt-related transcription factor 2 (RUNX2) and vascular endothelial growth factor alpha (VEGFA) in human osteosarcoma (OS).

    Authors: Jilong Yang, Linru Zhao, Wei Tian, Zhichao Liao, Hong Zheng, Guowen Wang and Kexin Chen
    Citation: BMC Medical Genomics 2013 6:56
  11. Structure and function of the human brain are subjected to dramatic changes during its development and aging. Studies have demonstrated that microRNAs (miRNAs) play an important role in the regulation of brain...

    Authors: Weiguo Li, Lina Chen, Wan Li, Xiaoli Qu, Weiming He, Yuehan He, Chenchen Feng, Xu Jia, Yanyan Zhou, Junjie Lv, Binhua Liang, Binbin Chen and Jing Jiang
    Citation: BMC Medical Genomics 2013 6:55
  12. Colorectal cancer is the third leading cause of cancer deaths in the United States. The initial assessment of colorectal cancer involves clinical staging that takes into account the extent of primary tumor inv...

    Authors: HoJoon Lee, Patrick Flaherty and Hanlee P Ji
    Citation: BMC Medical Genomics 2013 6:54
  13. Non-small cell lung cancer (NSCLC), a leading cause of cancer deaths, represents a heterogeneous group of neoplasms, mostly comprising squamous cell carcinoma (SCC), adenocarcinoma (AC) and large-cell carcinom...

    Authors: Vladimir Lazar, Chen Suo, Cedric Orear, Joost van den Oord, Zsofia Balogh, Justine Guegan, Bastien Job, Guillaume Meurice, Hugues Ripoche, Stefano Calza, Johanna Hasmats, Joakim Lundeberg, Ludovic Lacroix, Philippe Vielh, Fabienne Dufour, Janne Lehtiö…
    Citation: BMC Medical Genomics 2013 6:53
  14. Neurodegenerative diseases (NDs) are characterized by the progressive loss of neurons in the human brain. Although the majority of NDs are sporadic, evidence is accumulating that they have a strong genetic com...

    Authors: Dokyun Na, Mushfiqur Rouf, Cahir J O’Kane, David C Rubinsztein and Jörg Gsponer
    Citation: BMC Medical Genomics 2013 6:52
  15. With digitisation and the development of computer-aided diagnosis, histopathological image analysis has attracted considerable interest in recent years. In this article, we address the problem of the automated...

    Authors: Gang Zhang, Jian Yin, Ziping Li, Xiangyang Su, Guozheng Li and Honglai Zhang
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S10

    This article is part of a Supplement: Volume 6 Supplement 3

  16. Currently, a surgical approach is the best curative treatment for those with hepatocellular carcinoma (HCC). However, this requires HCC detection and removal of the lesion at an early stage. Unfortunately, mos...

    Authors: Mengjun Wang, Anand Mehta, Timothy M Block, Jorge Marrero, Adrian M Di Bisceglie and Karthik Devarajan
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S9

    This article is part of a Supplement: Volume 6 Supplement 3

    The Erratum to this article has been published in BMC Medical Genomics 2013 6:S11

  17. Images embedded in biomedical publications carry rich information that often concisely summarize key hypotheses adopted, methods employed, or results obtained in a published study. Therefore, they offer valuab...

    Authors: Jianqiang Sheng, Songhua Xu and Xiaonan Luo
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S8

    This article is part of a Supplement: Volume 6 Supplement 3

  18. Acute inflammation is a severe medical condition defined as an inflammatory response of the body to an infection. Its rapid progression requires quick and accurate decisions from clinicians. Inadequate and del...

    Authors: Vladan Radosavljevic, Kosta Ristovski and Zoran Obradovic
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S7

    This article is part of a Supplement: Volume 6 Supplement 3

  19. Insulin secreted by pancreatic islet β-cells is the principal regulating hormone of glucose metabolism and plays a key role in controlling glucose level in blood. Impairment of the pancreatic islet function may c...

    Authors: Yang Pu, Saangho Lee, David C Samuels, Layne T Watson and Yang Cao
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S6

    This article is part of a Supplement: Volume 6 Supplement 3

  20. Phylogenetic analyses can resolve historical relationships among genes, organisms or higher taxa. Understanding such relationships can elucidate a wide range of biological phenomena, including, for example, th...

    Authors: Maryam Panahiazar, Amit P Sheth, Ajith Ranabahu, Rutger A Vos and Jim Leebens-Mack
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S5

    This article is part of a Supplement: Volume 6 Supplement 3

  21. During the last few years, the knowledge of drug, disease phenotype and protein has been rapidly accumulated and more and more scientists have been drawn the attention to inferring drug-disease associations by...

    Authors: Yu-Fen Huang, Hsiang-Yuan Yeh and Von-Wun Soo
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S4

    This article is part of a Supplement: Volume 6 Supplement 3

  22. The aim of this report is to provide a mathematical model of the mechanism for making binary fate decisions about cell death or survival, during and after Photodynamic Therapy (PDT) treatment, and to supply th...

    Authors: Ioannis Gkigkitzis
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S3

    This article is part of a Supplement: Volume 6 Supplement 3

  23. In recent years, both single-nucleotide polymorphism (SNP) array and functional magnetic resonance imaging (fMRI) have been widely used for the study of schizophrenia (SCZ). In addition, a few studies have bee...

    Authors: Hongbao Cao, Junbo Duan, Dongdong Lin, Vince Calhoun and Yu-Ping Wang
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S2

    This article is part of a Supplement: Volume 6 Supplement 3

  24. The problem of efficient utilization of genome-wide expression profiles for identification and prediction of complex disease conditions is both important and challenging. Polygenic pathologies such as most typ...

    Authors: Nikolay Balov
    Citation: BMC Medical Genomics 2013 6(Suppl 3):S1

    This article is part of a Supplement: Volume 6 Supplement 3

  25. Steatohepatitis occurs in alcoholic liver disease and may progress to liver cirrhosis and hepatocellular carcinoma. Its molecular pathogenesis is to a large degree unknown. Histone modifications play a key rol...

    Authors: Madhusudhan Bysani, Ola Wallerman, Susanne Bornelöv, Kurt Zatloukal, Jan Komorowski and Claes Wadelius
    Citation: BMC Medical Genomics 2013 6:50
  26. Myocardial infarction (MI) often results in left ventricular (LV) remodeling followed by heart failure (HF). It is of great clinical importance to understand the molecular mechanisms that trigger transition fr...

    Authors: Dorota Tulacz, Urszula Mackiewicz, Michal Maczewski, Agata Maciejak, Monika Gora and Beata Burzynska
    Citation: BMC Medical Genomics 2013 6:49
  27. Massively parallel sequencing (MPS) has revolutionised biomedical research and offers enormous capacity for clinical application. We previously reported Hi-Plex, a streamlined highly-multiplexed PCR-MPS approa...

    Authors: Tú Nguyen-Dumont, Zhi L Teo, Bernard J Pope, Fleur Hammet, Maryam Mahmoodi, Helen Tsimiklis, Nelly Sabbaghian, Marc Tischkowitz, William D Foulkes, Graham G Giles, John L Hopper, Melissa C Southey and Daniel J Park
    Citation: BMC Medical Genomics 2013 6:48
  28. Poor maternal vitamin D intake is a risk factor for subsequent childhood asthma, suggesting that in utero changes related to vitamin D responsive genes might play a crucial role in later disease susceptibility. W...

    Authors: Alvin T Kho, Sunita Sharma, Weiliang Qiu, Roger Gaedigk, Barbara Klanderman, Simin Niu, Chris Anderson, James S Leeder, Scott T Weiss and Kelan G Tantisira
    Citation: BMC Medical Genomics 2013 6:47
  29. NKX2-5, GATA4 and HAND1 are essential for heart development, however, little is known regarding their epigenetic regulation in the pathogenesis of tetralogy of fallot (TOF).

    Authors: Wei Sheng, Yanyan Qian, Huijun Wang, Xiaojing Ma, Ping Zhang, Lianwei Diao, Quan An, Long Chen, Duan Ma and Guoying Huang
    Citation: BMC Medical Genomics 2013 6:46
  30. A wealth of nuclear receptor binding data has been generated by the application of chromatin immunoprecipitation (ChIP) techniques. However, there have been relatively few attempts to apply these datasets to h...

    Authors: Adam E Handel, Geir K Sandve, Giulio Disanto, Lahiru Handunnetthi, Gavin Giovannoni and Sreeram V Ramagopalan
    Citation: BMC Medical Genomics 2013 6:45
  31. Resilience or the ability of our body to cope with daily-life challenges has been proposed as a new definition of health, with restoration of homeostasis as target resultant of various physiological stress res...

    Authors: Suzan Wopereis, Danielle Wolvers, Marjan van Erk, Michiel Gribnau, Bas Kremer, Ferdi A van Dorsten, Esther Boelsma, Ursula Garczarek, Nicole Cnubben, Leon Frenken, Paul van der Logt, Henk FJ Hendriks, Ruud Albers, John van Duynhoven, Ben van Ommen and Doris M Jacobs
    Citation: BMC Medical Genomics 2013 6:44
  32. Tumour growth in colorectal cancer and other solid cancers is frequently supported by activating mutations in the epidermal growth factor receptor (EGFR) signaling pathway (Patholog Res Int 2011:932932, 2011)....

    Authors: Samuel Wormald, Liz Milla and Liam O’Connor
    Citation: BMC Medical Genomics 2013 6:43
  33. Bladder cancer exists as several distinct subtypes, including urothelial carcinoma (UCa), squamous cell carcinoma (SCCa), adenocarcinoma and small cell carcinoma. These entities, despite showing distinct morph...

    Authors: Donna E Hansel, Zhongfa Zhang, David Petillo and Bin T Teh
    Citation: BMC Medical Genomics 2013 6:42
  34. The majority of gastric cancer cases are believed to be caused by chronic infection with the bacterium Helicobacter pylori, and atrophic corpus gastritis is a predisposing condition to gastric cancer development....

    Authors: Intawat Nookaew, Kaisa Thorell, Kuntal Worah, Shugui Wang, Martin Lloyd Hibberd, Henrik Sjövall, Sven Pettersson, Jens Nielsen and Samuel B Lundin
    Citation: BMC Medical Genomics 2013 6:41
  35. Intratumoral heterogeneity is a major obstacle for the treatment of cancer, as the presence of even minor populations that are insensitive to therapy can lead to disease relapse. Increased clonal diversity has...

    Authors: Matthew Anaka, Christopher Hudson, Pu-Han Lo, Hongdo Do, Otavia L Caballero, Ian D Davis, Alexander Dobrovic, Jonathan Cebon and Andreas Behren
    Citation: BMC Medical Genomics 2013 6:40
  36. Unexpected cholestasis substantially contributes to drug failure in clinical trials. Current models used for safety assessment in drug development do not accurately predict cholestasis in humans. Therefore, it...

    Authors: Ewa Szalowska, Geert Stoopen, Maria J Groot, Peter JM Hendriksen and Ad ACM Peijnenburg
    Citation: BMC Medical Genomics 2013 6:39
  37. Differential diagnosis between malignant follicular thyroid cancer (FTC) and benign follicular thyroid adenoma (FTA) is a great challenge for even an experienced pathologist and requires special effort. Molecu...

    Authors: Aleksandra Pfeifer, Bartosz Wojtas, Malgorzata Oczko-Wojciechowska, Aleksandra Kukulska, Agnieszka Czarniecka, Markus Eszlinger, Thomas Musholt, Tomasz Stokowy, Michal Swierniak, Ewa Stobiecka, Dagmara Rusinek, Tomasz Tyszkiewicz, Monika Kowal, Michal Jarzab, Steffen Hauptmann, Dariusz Lange…
    Citation: BMC Medical Genomics 2013 6:38
  38. Hunter syndrome (HS) is a lysosomal storage disease caused by iduronate-2-sulfatase (IDS) deficiency and loss of ability to break down and recycle the glycosaminoglycans, heparan and dermatan sulfate, leading ...

    Authors: Gianluigi Mazzoccoli, Rosella Tomanin, Tommaso Mazza, Francesca D’Avanzo, Marika Salvalaio, Laura Rigon, Alessandra Zanetti, Valerio Pazienza, Massimo Francavilla, Francesco Giuliani, Manlio Vinciguerra and Maurizio Scarpa
    Citation: BMC Medical Genomics 2013 6:37
  39. Intracranial aneurysm (IA) is one of the most lethal forms of cerebrovascular diseases characterized by endothelial dysfunction, vascular smooth muscle cell phenotypic modulation, inflammation and consequently...

    Authors: Yugang Jiang, Mingming Zhang, Hua He, Jia Chen, Hua Zeng, Jia Li and Ranhui Duan
    Citation: BMC Medical Genomics 2013 6:36
  40. Alterations in epigenetic marks, including methylation or acetylation, are common in human cancers. For many epigenetic pathways, however, direct measures of activity are unknown, making their role in various ...

    Authors: Adam L Cohen, Stephen R Piccolo, Luis Cheng, Rafaella Soldi, Bing Han, W Evan Johnson and Andrea H Bild
    Citation: BMC Medical Genomics 2013 6:35
  41. Decades of research strongly suggest that the genetic etiology of autism spectrum disorders (ASDs) is heterogeneous. However, most published studies focus on group differences between cases and controls. In co...

    Authors: Malcolm G Campbell, Isaac S Kohane and Sek Won Kong
    Citation: BMC Medical Genomics 2013 6:34
  42. Pancreatic cancer is a highly lethal cancer with limited diagnostic and therapeutic modalities.

    Authors: Jinping Jia, Hemang Parikh, Wenming Xiao, Jason W Hoskins, Holger Pflicke, Xuelu Liu, Irene Collins, Weiyin Zhou, Zhaoming Wang, John Powell, Snorri S Thorgeirsson, Udo Rudloff, Gloria M Petersen and Laufey T Amundadottir
    Citation: BMC Medical Genomics 2013 6:33
  43. Currently, diagnosis of affected individuals with rare genetic disorders can be lengthy and costly, resulting in a diagnostic odyssey and in many patients a definitive molecular diagnosis is never achieved des...

    Authors: Darrell L Dinwiddie, Sarah E Soden, Carol J Saunders, Neil A Miller, Emily G Farrow, Laurie D Smith and Stephen F Kingsmore
    Citation: BMC Medical Genomics 2013 6:32
  44. Neutrophil antigens are involved in a variety of clinical conditions including transfusion-related acute lung injury (TRALI) and other transfusion-related diseases. Recently, there are five characterized group...

    Authors: Hsueh-Ting Chu, Han Lin, Theresa Tsun-Hui Tsao, Chun-Fan Chang, William WL Hsiao, Tze-Jung Yeh, Ching-Mao Chang, Yen-Wenn Liu, Tse-Yi Wang, Ko-Chun Yang, Tsung-Jui Chen, Jen-Chih Chen, Kuang-Chi Chen and Cheng-Yan Kao
    Citation: BMC Medical Genomics 2013 6:31
  45. Obstructive sleep apnea (OSA) is associated with adverse and interdependent cognitive and cardiovascular consequences. Increasing evidence suggests that nitric oxide synthase (NOS) and endothelin family (EDN) gen...

    Authors: Siriporn Chatsuriyawong, David Gozal, Leila Kheirandish-Gozal, Rakesh Bhattacharjee, Ahamed A Khalyfa, Yang Wang, Wasana Sukhumsirichart and Abdelnaby Khalyfa
    Citation: BMC Medical Genomics 2013 6:29
  46. The accumulation of somatic mutations in genes and molecular pathways is a major factor in the evolution of oral squamous cell carcinoma (OSCC), which sparks studies to identify somatic mutations with clinical...

    Authors: Qu Zhang, Jun Zhang, Hong Jin and Sitong Sheng
    Citation: BMC Medical Genomics 2013 6:28
  47. Small nucleolar RNAs (snoRNAs) and small Cajal body-specific RNAs are non-coding RNAs involved in the maturation of other RNA molecules. Alterations of sno/scaRNA expression may play a role in cancerogenesis. ...

    Authors: Domenica Ronchetti, Laura Mosca, Giovanna Cutrona, Giacomo Tuana, Massimo Gentile, Sonia Fabris, Luca Agnelli, Gabriella Ciceri, Serena Matis, Carlotta Massucco, Monica Colombo, Daniele Reverberi, Anna Grazia Recchia, Sabrina Bossio, Massimo Negrini, Pierfrancesco Tassone…
    Citation: BMC Medical Genomics 2013 6:27
  48. As part of the civil aviation safety program to define the adverse effects of ethanol on flying performance, we performed a DNA microarray analysis of human whole blood samples from a five-time point study of ...

    Authors: Doris M Kupfer, Vicky L White, David L Strayer, Dennis J Crouch and Dennis Burian
    Citation: BMC Medical Genomics 2013 6:26

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