Table 1 Summary of HIP2 database. The numbers of peptides and proteins represent unique entries that are the union of multiple subjects, possibly from different ethnic groups.
From: HIP2: An online database of human plasma proteins from healthy individuals
Source | Platform | Peptides | Proteins | Search Software |
|---|---|---|---|---|
HUPO PPP (3,020 proteins and 47,950 peptides) | ESI-MS/MS_DECA | 712 | 348 | SEQUEST |
ESI-MS/MS_DECAXP | 5796 | 2149 | SEQUEST | |
ESI-MS/MS_LCQ | 1818 | 427 | SEQUEST/SONAR | |
ESI-MS/MS_QSTAR | 309 | 137 | SEQUEST | |
ESI-MS/MS_QTOF | 5078 | 573 | MASCOT | |
ESI-MS/MS_QTRAP | 195 | 51 | MASCOT | |
MALDI_MS/MS_QSTAR | 384 | 60 | SEQUEST/MASCOT | |
David Clemmer's group (9,087 proteins and 37,842 peptides) | IMS_MS/MS_TOF | 35781 | 9,087 | MASCOT |
PeptideAtlas (788 proteins and 6,039 peptides) | ESI-MS/MS_DECA | 260 | 110 | SEQUEST |
ESI-MS/MS_DECAXP | 317 | 159 | SEQUEST | |
ESI-MS/MS_LCQ | 1101 | 263 | SEQUEST | |
ESI-MS/MS_QSTAR | 14 | 14 | SEQUEST | |
ESI-MS/MS_QTOF | 728 | 215 | SEQUEST | |
LC_MS/MS* | 1153 | 250 | SEQUEST | |
Leigh Anderson's group (1,175 proteins) | 2DEMS & LC_MS/MS* | ---- | 928 | SEQUEST |