Skip to main content

Table 1 Summary of HIP2 database. The numbers of peptides and proteins represent unique entries that are the union of multiple subjects, possibly from different ethnic groups.

From: HIP2: An online database of human plasma proteins from healthy individuals

Source Platform Peptides Proteins Search Software
HUPO PPP (3,020 proteins and 47,950 peptides) ESI-MS/MS_DECA 712 348 SEQUEST
  ESI-MS/MS_DECAXP 5796 2149 SEQUEST
  ESI-MS/MS_LCQ 1818 427 SEQUEST/SONAR
  ESI-MS/MS_QSTAR 309 137 SEQUEST
  ESI-MS/MS_QTOF 5078 573 MASCOT
  ESI-MS/MS_QTRAP 195 51 MASCOT
  MALDI_MS/MS_QSTAR 384 60 SEQUEST/MASCOT
David Clemmer's group (9,087 proteins and 37,842 peptides) IMS_MS/MS_TOF 35781 9,087 MASCOT
PeptideAtlas (788 proteins and 6,039 peptides) ESI-MS/MS_DECA 260 110 SEQUEST
  ESI-MS/MS_DECAXP 317 159 SEQUEST
  ESI-MS/MS_LCQ 1101 263 SEQUEST
  ESI-MS/MS_QSTAR 14 14 SEQUEST
  ESI-MS/MS_QTOF 728 215 SEQUEST
  LC_MS/MS* 1153 250 SEQUEST
Leigh Anderson's group (1,175 proteins) 2DEMS & LC_MS/MS* ---- 928 SEQUEST
  1. *Not defined