Skip to main content

Table 3 Gene names, aliases, and qPCR assay numbers.

From: Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response

Gene Grouping

Gene Symbol

Assay-on-Demand Catalogue #

Gene Name

Aliases

Microvascular

EDN2

Rn00561135_m1

Endothelin 2

ET2

 

EDNRB

Rn00569139_m1

Endothelin receptor B

ETRB, ETB

 

ICAM1

Rn00564227_m1

Intercellular adhesion molecule 1

CD54

 

MCT1

Rn00562332_m1

Monocarboxylate transporter 1

Slc16a1

 

NPPA

Rn00561661_m1

Natriuretic peptide precursor A

ANP

 

NPR3

Rn00563495_m1

Natriuretic peptide receptor 3

NPR-C, ANP-CR

 

VCAM1

Rn00563627_m1

Vascular cell adhesion molecule 1

 
 

VEGFA

Rn00582935_m1

Vascular endothelial growth factor A

VEGF

Inflammatory

C1-INH

Rn01485600_m1

Complement 1-inhibitor

Serping 1, C1NH, C1l

 

CCL2

Rn00580555_m1

Chemokine (C-C motif) ligand 2

MCP1, GDCF2, MCAF, SCYA2, SMCCF

 

CCR5

Rn00588629_m1

Chemokine, CC Motif, Receptor 5

CCCKR5, CMKBR5, CKR5

 

CD44

Rn00563924_m1

Cd44 antigen

CDW44, Pgp1

 

CHI3L1

Rn01490608_m1

Chitinase 3-Like 1

GP39, YKL40

 

HSPB1

Rn00583001_g1

Heat shock 27 kDa protein 1

HMN2B, HSP27, HSP28, HSP25

 

JAK3

Rn00563431_m1

Janus Kinase 3

JAKL

 

IL-1β

Rn00580432_m1

Interleukin 1 beta

IL-1

 

IL-6

Rn00561420_m1

Interleukin 6

BSF2, HGF, HSF, IFNB2, IL-6

 

LAMA5

Rn01415966_g1

Laminin, alpha 5

 
 

LGALS3

Rn00582910_m1

Lectin, galactoside-binding, soluble, 3

CBP35, GAL3, GALBP, MAC2

 

LGALS3BP

Rn00478303_m1

lectin, galactoside-binding, soluble, 3, binding protein

MAC2BP, Serum Protein 90K

 

PEDF

Rn00709999_m1

Pigment epithelium-derived growth factor

SERPINF1

 

STAT3

Rn00680715_m1

Signal transducer and activator of transcription 3

APRF

 

TIMP1

Rn00587558_m1

Tissue inhibitor of metalloproteinase 1

EPA

Neuronal Function

CHRNA4

Rn00577436_m1

Cholinergic receptor, nicotinic, alpha

BFNC, EBN, EBN1, NACRA4

 

DCAMKL1

Rn00584294_m1

Doublecortin-like kinase 1

Dckl1, Cpg16

 

FEZ2

Rn01468629_m1

Fasciculation and elongation zeta 2

Zygin II

 

GRIN2A

Rn00561341_m1

Glutamate receptor, ionotropic, NMDA 2A

NMDAR2A, NR2A

 

KCNE2

Rn02133036_s1

Isk-related voltage-gated K+ channel 2

LQT5, LQT6, MGC138292, MIRP1

 

PCGF1

Rn01425394_g1

Polycomb group ring finger 1

Nspc1

 

PEPT2

Rn00581522_m1

Proton-dependent high affinity oligopeptide transporter

Slc15a2

 

GAT3

Rn00577664_m1

GABA transporter 3

Slc6a11

 

ZNF219

Rn01414563_g1

Zinc finger protein 219

ZFP219