Skip to main content

Table 3 Gene names, aliases, and qPCR assay numbers.

From: Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response

Gene Grouping Gene Symbol Assay-on-Demand Catalogue # Gene Name Aliases
Microvascular EDN2 Rn00561135_m1 Endothelin 2 ET2
  EDNRB Rn00569139_m1 Endothelin receptor B ETRB, ETB
  ICAM1 Rn00564227_m1 Intercellular adhesion molecule 1 CD54
  MCT1 Rn00562332_m1 Monocarboxylate transporter 1 Slc16a1
  NPPA Rn00561661_m1 Natriuretic peptide precursor A ANP
  NPR3 Rn00563495_m1 Natriuretic peptide receptor 3 NPR-C, ANP-CR
  VCAM1 Rn00563627_m1 Vascular cell adhesion molecule 1  
  VEGFA Rn00582935_m1 Vascular endothelial growth factor A VEGF
Inflammatory C1-INH Rn01485600_m1 Complement 1-inhibitor Serping 1, C1NH, C1l
  CCL2 Rn00580555_m1 Chemokine (C-C motif) ligand 2 MCP1, GDCF2, MCAF, SCYA2, SMCCF
  CCR5 Rn00588629_m1 Chemokine, CC Motif, Receptor 5 CCCKR5, CMKBR5, CKR5
  CD44 Rn00563924_m1 Cd44 antigen CDW44, Pgp1
  CHI3L1 Rn01490608_m1 Chitinase 3-Like 1 GP39, YKL40
  HSPB1 Rn00583001_g1 Heat shock 27 kDa protein 1 HMN2B, HSP27, HSP28, HSP25
  JAK3 Rn00563431_m1 Janus Kinase 3 JAKL
  IL-1β Rn00580432_m1 Interleukin 1 beta IL-1
  IL-6 Rn00561420_m1 Interleukin 6 BSF2, HGF, HSF, IFNB2, IL-6
  LAMA5 Rn01415966_g1 Laminin, alpha 5  
  LGALS3 Rn00582910_m1 Lectin, galactoside-binding, soluble, 3 CBP35, GAL3, GALBP, MAC2
  LGALS3BP Rn00478303_m1 lectin, galactoside-binding, soluble, 3, binding protein MAC2BP, Serum Protein 90K
  PEDF Rn00709999_m1 Pigment epithelium-derived growth factor SERPINF1
  STAT3 Rn00680715_m1 Signal transducer and activator of transcription 3 APRF
  TIMP1 Rn00587558_m1 Tissue inhibitor of metalloproteinase 1 EPA
Neuronal Function CHRNA4 Rn00577436_m1 Cholinergic receptor, nicotinic, alpha BFNC, EBN, EBN1, NACRA4
  DCAMKL1 Rn00584294_m1 Doublecortin-like kinase 1 Dckl1, Cpg16
  FEZ2 Rn01468629_m1 Fasciculation and elongation zeta 2 Zygin II
  GRIN2A Rn00561341_m1 Glutamate receptor, ionotropic, NMDA 2A NMDAR2A, NR2A
  KCNE2 Rn02133036_s1 Isk-related voltage-gated K+ channel 2 LQT5, LQT6, MGC138292, MIRP1
  PCGF1 Rn01425394_g1 Polycomb group ring finger 1 Nspc1
  PEPT2 Rn00581522_m1 Proton-dependent high affinity oligopeptide transporter Slc15a2
  GAT3 Rn00577664_m1 GABA transporter 3 Slc6a11
  ZNF219 Rn01414563_g1 Zinc finger protein 219 ZFP219