From: A genome-wide association study for late-onset Alzheimer's disease using DNA pooling
SNP ID | Chrom | Position | Gene Symbol | SNP Type | Minor Allele | Pooled fcas | Pooled fcon | Ind fcas | Ind fcon | Ind f 1958 | Comb Z-test pools | p Cases vs MRC Cons | p Cases vs All Cons |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Rs6859 α | 19 | 50073874 | PVRL2 | T/C | A | 0.423 | 0.324 | 0.519 | 0.419 | 0.417 | 6.00E-07 | 1.73E-10 | 6.09E-14 |
Rs157580 α | 19 | 50087106 | TOMM40 | A/G | G | 0.653 | 0.583 | 0.693 | 0.595 | 0.616 | 6.43E-05 | 8.24E-11 | 3.87E-11 |
Rs8106922α | 19 | 50093506 | TOMM40 | A/G | G | 0.622 | 0.507 | 0.698 | 0.599 | 0.596 | 5.89E-09 | 1.21E-10 | 3.96E-14 |
Rs405509 α | 19 | 50100676 | APOE | A/C | G | 0.547 | 0.468 | 0.558 | 0.463 | 0.521 | 7.33E-06 | 2.08E-09 | 4.77E-06 |
Rs439401 α | 19 | 50106291 | APOE | T/C | T | 0.303 | 0.372 | 0.276 | 0.361 | 0.357 | 8.97E-05 | 7.97E-09 | 9.15E-11 |
Rs727153 ‡ | 4 | 156012026 | intergenic | T/C | C | 0.425 | 0.515 | 0.475 | 0.540 | 0.535 | 0.0009 | 0.00002 | 3.37E-06 |
Rs3754675 | 2 | 101008361 | NPAS2 | T/C | C | 0.814 | 0.741 | 0.939 | 0.905 | 0.936 | 5.70E-06 | 0.00003 | 0.0144 |
Rs4699852 | 4 | 95699967 | intergenic | T/C | A | 0.392 | 0.468 | 0.431 | 0.493 | 0.451 | 0.0008 | 0.00004 | 0.0032 |
Rs2905990 | 5 | 11160513 | CTNND2 | A/G | T | 0.298 | 0.369 | 0.300 | 0.356 | 0.327 | 3.79E-05 | 0.00009 | 0.0014 |
Rs9600764 | 13 | 76208794 | intergenic | T/C | G | 0.904 | 0.860 | 0.974 | 0.953 | 0.964 | 9.98E-05 | 0.00019 | 0.0027 |
Rs1032412 | 2 | 163464614 | KCNH7 | A/G | G | 0.536 | 0.484 | 0.726 | 0.673 | 0.711 | 0.0024 | 0.00019 | 0.0097 |
Rs12510838 | 4 | 73326573 | NPFFR2 | A/G | G | 0.627 | 0.558 | 0.828 | 0.783 | 0.810 | 0.0008 | 0.00024 | 0.0047 |
Rs7140253 | 14 | 106305044 | intergenic | T/C | G | 0.772 | 0.711 | 0.898 | 0.862 | 0.875 | 3.18E-05 | 0.00024 | 0.0007 |
Rs1455280 | 4 | 61600197 | intergenic | T/C | G | 0.870 | 0.820 | 0.900 | 0.864 | 0.882 | 0.0001 | 0.00027 | 0.0026 |
Rs13397414 | 2 | 154056922 | intergenic | A/G | G | 0.529 | 0.428 | 0.895 | 0.859 | 0.867 | 3.44E-09 | 0.00028 | 0.0003 |
Rs587259 | 19 | 39348246 | LSM14A | T/C | T | 0.515 | 0.450 | 0.397 | 0.344 | 0.364 | 0.0002 | 0.00028 | 0.0009 |
Rs13115107 | 4 | 183493069 | intergenic | T/C | G | 0.466 | 0.537 | 0.687 | 0.736 | 0.722 | 0.0001 | 0.00032 | 0.0005 |
Rs1373900 | 2 | 193561888 | intergenic | T/C | T | 0.259 | 0.322 | 0.329 | 0.380 | 0.346 | 5.38E-05 | 0.00037 | 0.0087 |
Rs1911014 | 4 | 127131703 | intergenic | A/G | A | 0.145 | 0.205 | 0.124 | 0.162 | 0.155 | 3.56E-06 | 0.00037 | 0.0003 |
Rs17228994 | 5 | 14095376 | intergenic | A/C | C | 0.668 | 0.736 | 0.849 | 0.885 | 0.870 | 3.60E-05 | 0.00060 | 0.0025 |
Rs407146 | 16 | 13223156 | LOC729993 | A/C | T | 0.294 | 0.239 | 0.416 | 0.365 | 0.399 | 0.0007 | 0.00060 | 0.0137 |
Rs7937776 | 11 | 94336790 | HSPC148 | A/G | C | 0.576 | 0.642 | 0.797 | 0.837 | 0.826 | 0.0006 | 0.00067 | 0.0007 |
Rs3819902 | 21 | 42973084 | PDE9A | A/G | C | 0.623 | 0.555 | 0.914 | 0.883 | 0.887 | 0.0009 | 0.00068 | 0.0004 |
Rs16916856 | 8 | 52901703 | PCMTD1 | T/C | C | 0.745 | 0.677 | 0.887 | 0.852 | 0.868 | 7.80E-06 | 0.00069 | 0.0036 |
Rs393195 | 19 | 49184982 | ZNF155 | A/C | G | 0.600 | 0.525 | 0.760 | 0.715 | 0.745 | 0.0002 | 0.00071 | 0.0147 |
Rs12146414 | 10 | 17108257 | CUBN | A/G | G | 0.829 | 0.759 | 0.933 | 0.905 | 0.920 | 1.37E-05 | 0.00086 | 0.0067 |
Rs7798395 | 7 | 70326814 | WBSCR17 | T/C | C | 0.691 | 0.777 | 0.923 | 0.948 | 0.941 | 2.20E-06 | 0.00090 | 0.0011 |
Rs741477 ‡ | 2 | 64977962 | intergenic | A/G | G | 0.852 | 0.795 | 0.898 | 0.867 | 0.858 | 5.44E-05 | 0.00124 | 3.05E-05 |
Rs10161338‡ | 12 | 114328023 | intergenic | T/C | C | 0.759 | 0.682 | 0.902 | 0.872 | 0.875 | 3.52E-05 | 0.00176 | 0.0009 |
Rs10406335‡ | 19 | 49325793 | ZNF225 | A/G | G | 0.637 | 0.571 | 0.905 | 0.878 | 0.876 | 0.0003 | 0.00390 | 0.0009 |
Rs9324088 ‡ | 14 | 106041164 | intergenic | T/C | G | 0.616 | 0.544 | 0.751 | 0.718 | 0.699 | 0.0003 | 0.01295 | 0.0002 |