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Table 1 Dataset content from PrognoScan

From: PrognoScan: a new database for meta-analysis of the prognostic value of genes

Dataset Cancer type Subtype Cohort Author/Contributor Array type n Data source
GSE13507 Bladder cancer Transitional cell carcinoma Cheongju Kim Human-6 v2 n = 165 GEO
GSE5287 Bladder cancer   Aarhus (1995–2004) Als et al. [10] HG-U133A n = 30 GEO
GSE12417-GPL570 Blood cancer AML AMLCG (2004) Metzeler et al. [11] HG-U133_Plus_2 n = 79 GEO
GSE12417-GPL96 Blood cancer AML AMLCG (1999–2003) Metzeler et al. [11] HG-U133A n = 163 GEO
GSE12417-GPL97 Blood cancer AML AMLCG (1999–2003) Metzeler et al. [11] HG-U133B n = 163 GEO
GSE8970 Blood cancer AML San Diego Raponi et al. [12] HG-U133A n = 34 GEO
GSE4475 Blood cancer B-cell lymphoma Berlin (2003–2005) Hummel et al. [13] HG-U133A n = 158 GEO
E-TABM-346 Blood cancer DLBCL GELA (1998–2000) Jais et al. [14] HG-U133A n = 53 ArrayExpress
GSE2658 Blood cancer Multiple myeloma Arkansas Zhan et al. [15] HG-U133_Plus_2 n = 559 GEO
E-TABM-158 Breast cancer   UCSF, CPMC (1989–1997) Chin et al. [16] HG-U133A n = 129 ArrayExpress
GSE11121 Breast cancer   Mainz (1988–1998) Schmidt et al. [17] HG-U133A n = 200 GEO
GSE1378 Breast cancer   MGH (1987–2000) Ma et al. [18] Arcturus 22 k n = 60 GEO
GSE1379 Breast cancer   MGH (1987–2000) Ma et al. [18] Arcturus 22 k n = 60 GEO
GSE1456-GPL96 Breast cancer   Stockholm (1994–1996) Pawitan et al. [19] HG-U133A n = 159 GEO
GSE1456-GPL97 Breast cancer   Stockholm (1994–1996) Pawitan et al. [19] HG-U133B n = 159 GEO
GSE2034 Breast cancer   Rotterdam (1980–1995) Wang et al. [20] HG-U133A n = 286 GEO
GSE2990 Breast cancer   Uppsala, Oxford Sotiriou et al. [21] HG-U133A n = 187 GEO
GSE3143 Breast cancer   Duke Bild et al. [22] HG-U95A n = 158 GEO
GSE3494-GPL96 Breast cancer   Uppsala (1987–1989) Miller et al. [23] HG-U133A n = 236 GEO
GSE3494-GPL97 Breast cancer   Uppsala (1987–1989) Miller et al. [23] HG-U133B n = 236 GEO
GSE4922-GPL96 Breast cancer   Uppsala (1987–1989) Ivshina et al. [24] HG-U133A n = 249 GEO
GSE4922-GPL97 Breast cancer   Uppsala (1987–1989) Ivshina et al. [24] HG-U133B n = 249 GEO
GSE6532-GPL570 Breast cancer   GUYT Loi et al. [25] HG-U133_Plus_2 n = 87 GEO
GSE7378 Breast cancer   UCSF Zhou et al. [26] U133AAofAv2 n = 54 GEO
GSE7390 Breast cancer   Uppsala, Oxford, Stockholm, IGR, GUYT, CRH (1980–1998) Desmedt et al. [27] HG-U133A n = 198 GEO
GSE7849 Breast cancer   Duke (1990–2001) Anders et al. [28] HG-U95A n = 76 GEO
GSE9195 Breast cancer   GUYT2 Loi et al. [25] HG-U133_Plus_2 n = 77 GEO
GSE9893 Breast cancer   Montpellier, Bordeaux, Turin (1989–2001) Chanrion et al. [29] MLRG Human 21 K V12.0 n = 155 GEO
GSE11595 Esophagus cancer Adenocarcinoma Sutton Giddings CRUKDMF_22 K_v1.0.0 n = 34 GEO
GSE7696 Glioma Glioblastoma Lausanne Murat et al. [30] HG-U133_Plus_2 n = 70 GEO
GSE4271-GPL96 Glioma   MDA Phillips et al. [31] HG-U133A n = 77 GEO
GSE4271-GPL97 Glioma   MDA Phillips et al. [31] HG-U133B n = 77 GEO
GSE2837 Head and neck cancer Squamous cell carcinoma VUMC, VAMC, UTMDACC (1992–2005) Chung et al. [32] U133_X3P n = 28 GEO
HARVARD-LC Lung cancer Adenocarcinoma Harvard Beer et al. [33] HG-U95A n = 84 Author's web site
MICHIGAN-LC Lung cancer Adenocarcinoma Michigan (1994–2000) Beer et al. [33] HuGeneFL n = 86 Author's web site
GSE11117 Lung cancer NSCLC Basel Baty Novachip human 34.5 k n = 41 GEO
GSE3141 Lung cancer NSCLC Duke Bild et al. [22] HG-U133_Plus_2 n = 111 GEO
GSE4716-GPL3694 Lung cancer NSCLC Nagoya (1995–1996) Tomida et al. [34] GF200 n = 50 GEO
GSE4716-GPL3696 Lung cancer NSCLC Nagoya (1995–1996) Tomida et al. [34] GF201 n = 50 GEO
GSE8894 Lung cancer NSCLC Seoul Son HG-U133_Plus_2 n = 138 GEO
GSE4573 Lung cancer Squamous cell carcinoma Michigan (1991–2002) Raponi et al. [35] HG-U133A n = 129 GEO
DUKE-OC Ovarian cancer   Duke Bild et al. [22] HG-U133A n = 134 Author's web site
GSE8841 Ovarian cancer   Milan Mariani G4100A n = 83 GEO
E-DKFZ-1 Renal cell carcinoma   RZPD Sueltmann A-RZPD-20 n = 74 ArrayExpress
  1. Abbreviations: AML, Acute myelocytic leukemia; DLBCL, Diffuse large B-cell lymphoma; NSCLC, Non-small cell lung cancer