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Table 2 Tumor samples analyzed by DK-MICROBE*

From: Identification of microbial DNA in human cancer

Tumor Type Sample Name Library Origin # Tags Sequenced Total Pathogen Tags
Glioblastoma Multiforme H54OTR Duke 128056 0
  H80 CGAP 160995 0
  H259 CGAP 199585 1
  H270 CGAP 223570 1
  H336 CGAP 181478 1
  H423 CGAP 170548 4
  H502 CGAP 149766 0
  H542 CGAP 173466 3
  H693 CGAP 210774 1
  H1110 CGAP 194089 4
  H2620 Duke 79026 9
  TB2407 Duke 112358 1
  TB2495 Duke 179070 1
  TB2507 Duke 63386 0
  TB2512 Duke 109182 0
  TB2569 Duke 102768 1
  TB2580 Duke 134658 0
  TB2607 Duke 67042 0
  TB2620 Duke 92576 1
  TB2721 Duke 110354 0
  TB2854 Duke 125282 1
Pediatric Glioblastoma Multiforme H456 Duke 136308 4
  TB626 Duke 135562 2
Anaplastic Astrocytoma TB2492 Duke 120466 0
  TB2496 Duke 134908 3
  TB2677 Duke 129710 2
Pediatric Astrocytoma TB2277 Duke 158294 1
Anaplastic Oligodendroglioma TB2598 Duke 132894 0
  TB2741 Duke 127798 0
Medulloblastoma H283 Duke 186836 2
  H341 Duke 205402 0
  H458 Duke 179686 1
  H556 Duke 194696 4
  H581 Duke 185934 1
  TB771 Duke 243126 3
  H876 Duke 157822 0
  TB1339 Duke 194998 1
  TB1389 Duke 177448 1
  TB1961 Duke 183840 2
  TB2226 Duke 192046 1
  MHH1 CGAP 168562 2
Ovarian Carcinoma 463 JHU 120386 0
  505 JHU 125694 1
  713 JHU 99782 0
  1120 JHU 96666 1
  2708 JHU 112912 4
  OVCAR-3 JHU 120242 2
  SKOV-3 JHU 154098 9
Colon Carcinoma Co84 JHU 142785 1
  Co90 JHU 207016 0
  Co93 JHU 235632 5
Colon Metastasis (Liver) M10-23 JHU 182482 2
  M11-01 JHU 171898 1
  M12-02 JHU 210906 1
  M12-05 JHU 90780 0
  MJC1 JHU 210888 1
  MJC3 JHU 135264 1
  T4 JHU 118876 4
  1. *Number of tags sequenced and analyzed for each sample are listed by tumor type. Number of tags sequenced and total number of pathogen tags detected are indicated for each sample. Pathogen tag sequence origin is listed in Additional file 4. Abbreviations: CGAP, Cancer Genome Anatomy Project; JHU, Johns Hopkins University.