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Table 3 Annotation of the miRNA candidates.

From: Identification and analysis of miRNAs in human breast cancer and teratoma samples using deep sequencing

Locus ID Annotation Gene RefSeq Expression Phastcons Status
21019 Intron - AC124066.2 1,12,2,1 0.57 miR-1180
38843 Intron ARL10 - 0,0,3,2 0.99 miR-1271
6150 Intron C10orf33 - 4,0,1,4 1 miR-1287
6746 Intron JMJD1C - 1,4,2,1 1 miR-1296
27738 Intron DNMT3A - 3,12,7,4 0.99 miR-1301
8884 intron FADS1 NM_013402 2,0,9,2 0.34 miR-1908
37600 repeat - - 136,933,146,220 0.03 alt.miR-151
52195 intron CLCN5 NM_000084 0,4,0,0 1.00 alt.miR-500
12783 intron PATA13 NM_153023 1,1,3,0 0.01 miRNA
19011 repeat - - 8,2,0,0 0.98 miRNA
41039 exon C5orf21 NM_032042 0,2,1,0 0.46 miRNA
49828 intron ONPEP NM_032823 2,1,4,1 0.00 miRNA
53356 intron PNMA5 NM_052926 7,3,0,0 0.03 miRNA
6219 intron AK091396 AK091396 0,3,0,0 0.08 Cand
19702 intron MAP3K3 NM_203351 84,0,1,9 0.08 Cand
21361 intron PMP22 NM_000304 3,0,1,0 0.06 Cand
23602 exon* PRG2 NM_002728 0,0,3,0 0.60 Cand
25697 intron LPIN1 NM_145693 0,3,0,0 0.02 Cand
32226 exon SHANK3 NM_001080420 3,0,0,0 0.99 Cand
52275 intron BCORL1 NM_021946 3,0,0,0 0.99 Cand
  1. Columns show locus ID for the putative miRNAs, annotation, gene name and RefSeq accession (where applicable), expression (read counts), and conservation. For locus 6219, where no proper gene name or RefSeq is available, GenBank accession is given instead. 'Expression' shows the raw read count for BN, BC, CRL-7826, CRL-7732, and is summed for all reads in the locus. 'Phastcons' is the average Phastcons score [5254]. 'Status' shows if a locus is a miRNA or a candidate locus. The names of miRNAs that have already been included in miRBase are shown, with 'alt.miR-NNN' designating a predicted alternative precursor for miR-NN. *Anti-sense.