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Table 1 List of the first 35 decreased transcripts revealed by cDNA microarray analysis (ratio ATRX/control < 0.5).

From: Decreased expression of GRAF1/OPHN-1-L in the X-linked alpha thalassemia mental retardation syndrome

 

Gene name

ratio ATRX/control

GenBank ID

Clone ID

1

putative lymphocyte G0/G1 switch or G0S2 gene

0.23

BE873759

1217764

2

defensin, alpha 1, myeloid-related sequence

0.24

M26602

1716669

3

defensin, alpha 5, Paneth cell-specific

0.25

NM_021010

4174437

4

HAIK1 type I, intermediate filament cytocheratin or human Keratin 23 gene (KRT23)

0.26

25984

2820372

5

tumor necrosis factor, alpha-induced protein 3

0.29

AI028304

1878791

6

Oligophrenin-1 (the signal is probably reflecting cross-hybridization to GRAF1/OPHN-1-L, see text)

0.30

NM_002547

4216520

7

H.sapiens DNA for cyp related pseudogene

0.30

X90579

2073646

8

ESTs

0.31

AW470039

2136337

9

DKFZP434N093 protein

0.33

BG392388

1919233

10

XIAP associated factor-1

0.33

BG541762

4738521

11

immediate early response 3

0.36

N32077

1424495

12

Homo sapiens clone 24407 mRNA sequence

0.36

AF070575

488205

13

v-jun avian sarcoma virus 17 oncogene homolog

0.37

AI078377

1969563

14

small inducible cyt. Subfam. A (Cys-Cys), member 18, pulmonary and activation-regulated

0.39

NM_002988

3473223

15

regulator of G-protein signalling 1

0.40

S59049

3120390

16

branched chain aminotransferase 1, cytosolic

0.39

AI970531

3290230

17

hypothetical protein FLJ23231

0.39

AA640102

2348706

18

small inducible cytokine subfamily B (Cys-X-Cys), member 10

0.39

NM_001565

1656473

19

lactotransferrin

0.42

M73700

1861911

20

B-cell CLL/lymphoma 3

0.43

NM_005178

1867294

21

polymerase (RNA) III (DNA directed) (39 kD)

0.43

XM_009639

1682994

22

HS (clone B3B3E13) chrom 4p16.3 DNA fragment

0.43

BE789464

2619

23

RAB6 interacting, kinesin-like (rabkinesin6)

0.43

AV714379

1975194

24

HS cDNA FLJ11918 fis, clone HEMBB1000272

0.44

AA810748

1921725

25

DEAD/H (Asp-Glu-Ala-Asp/His) box polyp. 21

0.45

U41387

1879532

26

dual specificity phosphatase 2

0.44

NM_004418

518826

27

hypothetical protein, expressed in osteoblast

0.44

F12860

2537863

28

hypothetical protein FLJ23306

0.48

AI088306

2372178

29

interleukin 8

0.48

AV717082

2785701

30

COX15 (yeast) homolog, cyt.c oxid. ass.protein

0.47

XM_005811

1976440

31

Incyte EST

0.49

 

2895226

32

hypoxia-ind. fact. 1, alpha sub (basic helix-loop-helix transcription factor)

0.48

AU134078

1711151

33

dihydrolipoamide branched chain transacylase (E2 comp of branched chain keto acid dehyd. complex)

0.47

NM_001918

3521142

34

Human glucocorticoid receptor alpha mRNA, variant 3' UTR

0.47

U25029

3127171

35

ATP/GTP-binding protein

0.48

AA188236

3032908