Table 2 Distant gene fusions with multiple read support
Samples | Donor Gene (RefSeq) | Exon | 5' chr | 3' chr | Acceptor Gene (RefSeq) | Exon | Distance | Notes |
|---|---|---|---|---|---|---|---|---|
Long distance | Â | Â | Â | Â | Â | Â | Â | Â |
HBR(2) | IQCJ (NM_001042705) | 4/5 | +3 | +3 | SCHIP1 (NM_014575) | 2/8 | 501759 | 5 |
N3(1), T2(5), T3(15) | TMPRSS2 (NM_005656) | 1/14 | -21 | -21 | ERG (NM_004449) | 4/11 | 3062463 | 7 |
Scrambled exons | Â | Â | Â | Â | Â | Â | Â | Â |
UHR(2) | RPS6KB1 (NM_003161) | 4/15 | +17 | +17 | TMEM49 (NM_030938) | 12/12 | 74936 | 3,6 |
UHR(2) | GCN1L1 (NM_006836) | 2/58 | -12 | -12 | MSI1 (NM_002442) | 12/15 | 157217 | Â |
Inversions | Â | Â | Â | Â | Â | Â | Â | Â |
UHR(7) | GAS6 (NM_000820) | 12/15 | +13 | -13 | RASA3 (NM_007368) | 23/24 | 185397 | 6 |
UHR(2) | TGOLN2 (NM_006464) | 3/4 | -2 | +2 | USP39 (NM_006590) | 11/13 | 320033 | Â |
UHR(4) | ARFGEF2 (NM_006420) | 1/39 | +20 | -20 | SULF2 (NM_018837) | 3/21 | 1172861 | 2,4,6 |
UHR(2) | LITAF (NM_001136472) | 1/4 | -16 | +16 | DECR2 (NM_020664) | 2/9 | 11193286 | Â |
N1(2) | REV1 (NM_016316) | 3/23 | -2 | +2 | CPSF3 (NM_016207) | 10/18 | 89944295 | Â |
Translocations | Â | Â | Â | Â | Â | Â | Â | Â |
UHR(4) | BCAS4 (NM_017843) | 1/6 | +20 | +17 | BCAS3 (NM_017679) | 23/24 | Â | 3,4,6 |
UHR(3) | BCR (NM_004327) | 14/23 | +22 | +9 | ABL1 (NM_005157) | 2/11 | Â | 1,6 |
N1(2) | CAMTA1 (NM_015215) | 3/23 | +1 | -12 | SPPL3 (NM_139015) | 3/11 | Â | Â |
UHR(2) | DYNC1H1 (NM_001376) | 24/78 | +14 | +12 | EIF4B (NM_001417) | 8/15 | Â | Â |
T3(2) | MBTPS1 (NM_003791) | 22/23 | -16 | +15 | SERF2 (NM_001018108) | 3/3 | Â | Â |
N2(2) | OGT (NM_181672) | 6/22 | +X | -5 | RBM22 (NM_018047) | 4/11 | Â | Â |
N1(2) | ROR2 (NM_004560) | 1/9 | -9 | -17 | USP36 (NM_025090) | 2/20 | Â | Â |
T3(2) | SEC31A (NM_014933) | 1/27 | -4 | -6 | C6orf62 (NM_030939) | 2/5 | Â | 7 |
UHR(2) | TIMM9 (NM_012460) | 3/6 | -14 | -8 | PRKDC (NM_006904) | 26/86 | Â | Â |
N1(2) | ZDHHC8 (NM_013373) | 4/11 | +22 | +19 | UBL5 (NM_024292) | 3/5 | Â | Â |