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Table 2 Patient characteristics according to expression data set

From: Systematic Bias in Genomic Classification Due to Contaminating Non-neoplastic Tissue in Breast Tumor Samples

 

Tumor and normal pairs

UNC set, known % normal (UNC24)

NKI 295

Naderi et al.

Wang et al.

Natrajan et al.

Patients (n)

55

24

295

135

286

48

Microarrays (n)

118

24

295

307

286

48

Median RFS, months

14

31

78.2

119.5

86

NA

missing RFS, n (%)

33

6

0

1

0

48

Estrogen receptor status, n (%)

      

   positive

35 (63.6)

15 (62.5)

226 (76.6)

93 (68.9)

209 (73.1)

25 (52.1)

   negative

18 (32.7)

7 (29.2)

69 (23.4)

40 (29.6)

77 (26.9)

23 (47.9)

   missing

2 (3.6)

2 (8.3)

0 (0)

2 (1.5)

0 (0)

0 (0)

AGE, years

      

mean (standard deviation)

53.2 (13.9)

59.8 (17.0)

44.0 (5.5)

56.9 (8.9)

54 (12)

55 (12.6)

GRADE, n (%)

      

   1

5 (9.1)

2 (8.3)

75 (25.4)

35 (26.0)

7 (2.0)

0 (0)

   2

16 (29.1)

7 (29.2)

101 (34.2)

50 (37.0)

42 (15.0)

0 (0)

   3

19 (34.5)

14 (58.3)

119 (40.3)

49 (36.3)

148 (52.0)

48 (100.0)

   missing

15 (27.3)

1 (4.2)

0 (0)

1 (0.7)

89 (31.0)

0 (0)

TUMOR SIZE, n (%)

      

   < = 2

17 (30.9)

17 (70.8)

155 (52.5)

93 (68.9)

278 (0)

18 (37.5)

   > 2

38 (69.1)

6 (25)

140 (47.5)

41 (30.4)

8 (0)

30 (62.5)

   missing

0 (0)

1 (4.2)

0 (0)

1 (0.7)

0 (0)

0 (0)

NODE, n (%)

      

   positive

1 (1.8)

14 (58.3)

144 (48.8)

43 (31.9)

0 (0)

23 (48.0)

   negative

54 (98.2)

9 (37.5)

151 (51.2)

86 (63.7)

286 (100)

24 (50.0)

   missing

0 (0)

1 (4.2)

0 (0)

6 (4.4)

0(0)

1 (2.0)

TUMOR SUBTYPES, n (%)

      

   normal

4 (7.3)

1 (4.2)

8 (2.7)

13 (9.6)

15 (5.2)

1 (2.0)

   LumA

23 (41.8)

6 (25.0)

167 (56.6)

59 (43.7)

138 (48.3)

17 (35.4)

   LumB

9 (16.4)

9 (37.5)

51 (17.3)

25 (18.5)

51 (17.8)

8 (16.7)

   Her2

7 (12.7)

3 (12.5)

23 (7.8)

21 (15.6)

29 (10.1)

9 (18.8)

   Basal

12 (21.8)

5 (20.8)

46 (15.6)

17 (12.6)

53 (18.5)

13 (27.1)