Table 3 Amplicons on chromosome 7 detected by digital karyotyping
From: Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma
No. of amplicons | Start Position (bp) | End Position (bp) | Amplification Size (bp) | Known genes contained within amplicons |
|---|---|---|---|---|
1 | 85669352 | 85675348 | 5996 | -- |
2 | 90176250 | 90233199 | 56949 | PFTK1 |
3 | 92170683 | 92181579 | 10896 | -- |
4 | 92402830 | 92489679 | 86849 | CDK6 |
5 | 92525776 | 92559603 | 33827 | -- |
6 | 92621928 | 92628443 | 6515 | -- |
7 | 94153659 | 94160414 | 6755 | CASD1 |
8 | 94187248 | 94227832 | 40584 | SGCE |
9 | 95575453 | 95593279 | 17826 | DYNC1I1 |
10 | 95625240 | 95626171 | 931 | DYNC1I1 |
11 | 95626365 | 95634906 | 8541 | DYNC1I1 |
12 | 95857177 | 95888724 | 31547 | SLC25A13 |
13 | 95984342 | 95992052 | 7710 | -- |
14 | 96016428 | 96091391 | 74963 | -- |
15 | 96091675 | 96098719 | 7044 | -- |
16 | 96223512 | 96436326 | 212814 | SHFM1 |
17 | 96566511 | 96585224 | 18713 | -- |
18 | 100008093 | 100031196 | 23103 | ZCWPW1, MEPCE |
19 | 100188936 | 100202216 | 13280 | FBXO24, PCOLCE |
20 | 100212010 | 100322730 | 110720 | MOSPD3, TFR2, ACTL6B, GNB2, GIGYF1, POP7, EPO |
21 | 100514082 | 100516140 | 2058 | -- |
22 | 100594842 | 100615369 | 20527 | MUC12 |
23 | 100619990 | 100633128 | 13138 | MUC12 |
24 | 100899076 | 100900255 | 1179 | -- |
25 | 100920401 | 100933959 | 13558 | -- |
26 | 101043124 | 101046675 | 3551 | EMID2 |
27 | 101047291 | 101056595 | 9304 | EMID2 |
28 | 101542859 | 101587823 | 44964 | CUX1 |
29 | 101708443 | 101725375 | 16932 | CUX1 |
30 | 116320004 | 116359562 | 39558 | MET |
31 | 116359697 | 116359984 | 287 | MET |
32 | 116516633 | 116651559 | 134926 | CAPZA2, ST7, ST7OT1, ST7OT4 |
33 | 116832388 | 116859422 | 27034 | ST7, ST7OT3 |
34 | 116986284 | 117113342 | 127058 | ASZ1 |
35 | 117258567 | 117275904 | 17337 | CFTR |
36 | 117301541 | 117312368 | 10827 | CFTR |
37 | 117348151 | 117357569 | 9418 | CTTNBP2 |
38 | 117371511 | 117376667 | 5156 | CTTNBP2 |
39 | 117487299 | 117511084 | 23785 | CTTNBP2 |
40 | 117575700 | 117576160 | 460 | -- |
41 | 117604668 | 117718500 | 113832 | -- |
42 | 117727390 | 117773948 | 46558 | -- |
43 | 117862904 | 117882935 | 20031 | ANKRD7 |
44 | 117888893 | 117908976 | 20083 | -- |
45 | 118228295 | 118274830 | 46535 | -- |
46 | 118275399 | 118309895 | 34496 | -- |
47 | 118442613 | 118473838 | 31225 | -- |
48 | 118574464 | 118640670 | 66206 | -- |
49 | 149702946 | 149746115 | 43169 | -- |
50 | 153635222 | 153636533 | 1311 | DPP6 |