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Table 3 Amplicons on chromosome 7 detected by digital karyotyping

From: Digital karyotyping reveals probable target genes at 7q21.3 locus in hepatocellular carcinoma

No. of amplicons Start Position (bp) End Position (bp) Amplification Size (bp) Known genes contained within amplicons
1 85669352 85675348 5996 --
2 90176250 90233199 56949 PFTK1
3 92170683 92181579 10896 --
4 92402830 92489679 86849 CDK6
5 92525776 92559603 33827 --
6 92621928 92628443 6515 --
7 94153659 94160414 6755 CASD1
8 94187248 94227832 40584 SGCE
9 95575453 95593279 17826 DYNC1I1
10 95625240 95626171 931 DYNC1I1
11 95626365 95634906 8541 DYNC1I1
12 95857177 95888724 31547 SLC25A13
13 95984342 95992052 7710 --
14 96016428 96091391 74963 --
15 96091675 96098719 7044 --
16 96223512 96436326 212814 SHFM1
17 96566511 96585224 18713 --
18 100008093 100031196 23103 ZCWPW1, MEPCE
19 100188936 100202216 13280 FBXO24, PCOLCE
20 100212010 100322730 110720 MOSPD3, TFR2, ACTL6B, GNB2, GIGYF1, POP7, EPO
21 100514082 100516140 2058 --
22 100594842 100615369 20527 MUC12
23 100619990 100633128 13138 MUC12
24 100899076 100900255 1179 --
25 100920401 100933959 13558 --
26 101043124 101046675 3551 EMID2
27 101047291 101056595 9304 EMID2
28 101542859 101587823 44964 CUX1
29 101708443 101725375 16932 CUX1
30 116320004 116359562 39558 MET
31 116359697 116359984 287 MET
32 116516633 116651559 134926 CAPZA2, ST7, ST7OT1, ST7OT4
33 116832388 116859422 27034 ST7, ST7OT3
34 116986284 117113342 127058 ASZ1
35 117258567 117275904 17337 CFTR
36 117301541 117312368 10827 CFTR
37 117348151 117357569 9418 CTTNBP2
38 117371511 117376667 5156 CTTNBP2
39 117487299 117511084 23785 CTTNBP2
40 117575700 117576160 460 --
41 117604668 117718500 113832 --
42 117727390 117773948 46558 --
43 117862904 117882935 20031 ANKRD7
44 117888893 117908976 20083 --
45 118228295 118274830 46535 --
46 118275399 118309895 34496 --
47 118442613 118473838 31225 --
48 118574464 118640670 66206 --
49 149702946 149746115 43169 --
50 153635222 153636533 1311 DPP6