Data Set | L1-regularized regression R2 1 | Non-zero regressions/total "leave one out" regressions at maximum L1 R2 | Tissue | Genes in model | Gene ID |
---|---|---|---|---|---|
22 newborns, methylation at 1,536 CpGs assayed using Illumina's GoldenGate array | 0.78 | 21/22 | Blood | APOE | Apolipoprotein E |
 |  |  |  | MSX1 | Msh homeobox 1 |
 |  |  | Placenta | GRB10 | Growth factor receptor-bound protein 10 |
 |  |  |  | PGRMC1 | Progesterone receptor membrane component 1 |
 |  |  |  | RGS14 | Regulator of G-protein signaling 14 |
 |  |  |  | SHMT2 | Serine hydroxymethyl transferase 2 (mitochondrial) |
48 newborns, methylation at 27,578 CpGs assayed using Illumina's Infinium array | 0.50 | 44/48 | Blood and placenta, as above | Six genes, above | Â |
48 newborns, methylation at 27,578 CpGs assayed using Illumina's Infinium array | 0.70 | 45/48 | Blood | ATP6AP1 | Atpase, H + transporting, lysosomal accessory protein 1 |
 |  |  |  | PRSS21 | Protease, serine, 21 (testisin) |
 |  |  |  | RCOR1 | REST co-repressor 1 |
 |  |  | Placenta | ANGPT4 | Angiopoietin 4 |
 |  |  |  | CDK2 | Cyclin-dependent kinase 2 |
 |  |  |  | EVPL | Envoplakin |
 |  |  |  | NAT8L | FLJ37478: N-acetyltransferase 8-like (GCN5-related, putative) |
48 newborns, methylation at 27,578 CpGs assayed using Illumina's Infinium array | 0.84 | 44/48 | Blood and Placenta, as above | All 13 genes from both experiments, combined | Â |