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Table 1 Chemical treatment prediction ranks

From: Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data

  ToxProfiler Weighted global test GeneCodis single annotation
  CTD TM CTD TM CTD TM
BPA 9 (2.0e-07) 92 (1.0e-01) 18 (3.9e-04) 21 (6.2e-05) 10 (9.1e-08) -
ESThsa 38 (8.8e-02) 400 (2.4e-01) 269 (3.2e-03) 920 (5.6e-04) 4 (2.4e-02) -
ESTmmu 18 (3.5e-05) 189 (1.3e-04) 360 (5.7e-01) 482 (4.3e-01) - -
TCDD 19 (8.0e-07) 89 (1.2e-03) 14 (2.9e-10) 84 (5.7e-10) 1 (5.3e-32) 89 (1.7e-05)
VitD3 9 (4.5e-02) 400 (3.0e-01) 186 (2.4e-03) 762 (6.0e-04) 1 (2.0e-26) 200 (6.0e-03)
ZnSO4 9 (3.8e-05) 6 (3.4e-04) 3 (2.6e-06) 4 (6.8e-05) - -
  1. Chemical treatment prediction rank and false discovery rate-corrected p-value (within parentheses) per gene expression data set for the different gene set analysis tools. Significant results (false discovery rate-corrected p<0.05) are in bold. GeneCodis only reports results with a false discovery rate-corrected p-value smaller than 0.05. Missing values denote such non-significant results.