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Table 1 Summary statistics of whole transcriptome sequencing data used in this study

From: Whole transcriptome sequencing identifies tumor-specific mutations in human oral squamous cell carcinoma

 

Patient 33

Patient 51

 

Normal

Tumor

Normal

Tumor

Total reads

229 M

256 M

227 M

199 M

HQ reads (%)a

68.9 M (30.0)

47.0 M (18.3)

53.1 M (23.4)

17.8 M (9.0)

HQ mapped (%)b

6.4 M (9.3)

4.4 M (9.3)

9.1 M (17.1)

3.4 M (18.8)

  1. a HQ reads high-quality reads in which each base has a Q-score ≥ 20. Numbers in the brackets are percentages of high quality reads out of total reads.
  2. b HQ mapped number of high quality reads of which mapping quality score ≥ 30. Numbers in brackets are percentages of those mapped reads out of high quality reads.
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BMC Medical Genomics

ISSN: 1755-8794

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