Table 9 Percentage of variants, by type, that are called identically at the site level across different subsets of replicates

NA12878 WES

1/7

2/7

3/7

4/7

5/7

6/7

7/7

SNV

3.20

1.37

1.18

1.28

1.42

2.69

88.85

Indel

10.25

4.60

2.62

2.33

2.51

3.71

73.99

NA18507 WES

1/5

2/5

3/5

4/5

5/5

SNV

2.87

1.60

1.47

2.62

91.43

Indel

7.61

3.57

2.96

3.70

82.17

NA12878 WGS

1/6

2/6

3/6

4/6

5/6

6/6

SNV

3.40

1.76

1.52

1.79

3.69

87.80

Indel

20.20

9.89

6.11

5.17

7.07

51.60

NA18507 WGS

1/3

2/3

3/3

SNV

2.61

2.93

94.46

Indel

20.01

13.10

66.89