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Table 2 GeneChip QC metric summary and GEP70 scores for pooled aRNA titration experiments

From: Translating a gene expression signature for multiple myeloma prognosis into a robust high-throughput assay for clinical use

Titration study Experiment 1 Chip ID μg aRNA hybridized to chip GEP70 risk group GEP70 risk score Mean GEP70 Standard deviation Chip QC Metrics Fail/Warning/Pass
RE13-000031-850291.CEL 10 Low 41.11 41.73 0.56 0/0/7
RE13-000032-850251.CEL 10 Low 42.19 0/0/7
RE13-000033-850371.CEL 10 Low 41.88 0/0/7
RE13-000034-850240.CEL 8 Low 41.20 41.25 0.29 0/0/7
RE13-000035-850377.CEL 8 Low 40.98 0/0/7
RE13-000036-850294.CEL 8 Low 41.55 0/0/7
RE13-000037-850370.CEL 6 Low 40.67 41.31 1.01 0/0/7
RE13-000038-850379.CEL 6 Low 42.47 0/0/7
RE13-000039-850245.CEL 6 Low 40.78 0/0/7
RE13-000040-850236.CEL 4 Low 40.90 41.42 0.54 0/0/7
RE13-000041-850376.CEL 4 Low 41.38 0/0/7
RE13-000042-850395.CEL 4 Low 41.98 0/0/7
RE13-000043-850397.CEL 2 Low 41.23 41.17 0.70 0/1/7
RE13-000044-850358.CEL 2 Low 41.85 0/0/7
RE13-000045-850369.CEL 2 Low 40.45 0/0/7
    Mean: 41.37 0.62  
Titration study experiment 2 Chip ID μg aRNA hybridized GEP70 risk group GEP70 risk score Mean GEP70 Standard deviation Chip QC Metrics Fail/Warning/Pass
RE13-000046-840059.CEL 10 Low 43.48 41.65 1.88 0/0/7
RE13-000047-840224.CEL 10 Low 41.76 0/0/7
RE13-000048-840239.CEL 10 Low 39.72 0/0/7
RE13-000049-840201.CEL 8 Low 43.95 43.46 0.43 0/0/7
RE13-000050-840219.CEL 8 Low 43.22 0/0/7
RE13-000051-840245.CEL 8 Low 43.20 0/0/7
RE13-000052-840243.CEL 6 Low 43.97 41.88 1.92 0/0/7
RE13-000053-840205.CEL 6 Low 40.19 0/0/7
RE13-000054-840242.CEL 6 Low 41.50 0/0/7
RE13-000055-840246.CEL 4 Low 42.71 43.20 0.96 0/0/7
RE13-000056-840051.CEL 4 Low 44.31 0/1/6
RE13-000057-840199.CEL 4 Low 42.59 0/0/7
RE13-000058-840213.CEL 2 Low 43.01 42.81 0.69 0/1/6
RE13-000059-840032.CEL 2 Low 42.04 0/1/6
RE13-000060-840236.CEL 2 Low 43.37 0/1/6
    Mean: 42.60 1.18