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Table 2 GeneChip QC metric summary and GEP70 scores for pooled aRNA titration experiments

From: Translating a gene expression signature for multiple myeloma prognosis into a robust high-throughput assay for clinical use

Titration study Experiment 1 Chip ID

μg aRNA hybridized to chip

GEP70 risk group

GEP70 risk score

Mean GEP70

Standard deviation

Chip QC Metrics Fail/Warning/Pass

RE13-000031-850291.CEL

10

Low

41.11

41.73

0.56

0/0/7

RE13-000032-850251.CEL

10

Low

42.19

0/0/7

RE13-000033-850371.CEL

10

Low

41.88

0/0/7

RE13-000034-850240.CEL

8

Low

41.20

41.25

0.29

0/0/7

RE13-000035-850377.CEL

8

Low

40.98

0/0/7

RE13-000036-850294.CEL

8

Low

41.55

0/0/7

RE13-000037-850370.CEL

6

Low

40.67

41.31

1.01

0/0/7

RE13-000038-850379.CEL

6

Low

42.47

0/0/7

RE13-000039-850245.CEL

6

Low

40.78

0/0/7

RE13-000040-850236.CEL

4

Low

40.90

41.42

0.54

0/0/7

RE13-000041-850376.CEL

4

Low

41.38

0/0/7

RE13-000042-850395.CEL

4

Low

41.98

0/0/7

RE13-000043-850397.CEL

2

Low

41.23

41.17

0.70

0/1/7

RE13-000044-850358.CEL

2

Low

41.85

0/0/7

RE13-000045-850369.CEL

2

Low

40.45

0/0/7

   

Mean:

41.37

0.62

 

Titration study experiment 2 Chip ID

μg aRNA hybridized

GEP70 risk group

GEP70 risk score

Mean GEP70

Standard deviation

Chip QC Metrics Fail/Warning/Pass

RE13-000046-840059.CEL

10

Low

43.48

41.65

1.88

0/0/7

RE13-000047-840224.CEL

10

Low

41.76

0/0/7

RE13-000048-840239.CEL

10

Low

39.72

0/0/7

RE13-000049-840201.CEL

8

Low

43.95

43.46

0.43

0/0/7

RE13-000050-840219.CEL

8

Low

43.22

0/0/7

RE13-000051-840245.CEL

8

Low

43.20

0/0/7

RE13-000052-840243.CEL

6

Low

43.97

41.88

1.92

0/0/7

RE13-000053-840205.CEL

6

Low

40.19

0/0/7

RE13-000054-840242.CEL

6

Low

41.50

0/0/7

RE13-000055-840246.CEL

4

Low

42.71

43.20

0.96

0/0/7

RE13-000056-840051.CEL

4

Low

44.31

0/1/6

RE13-000057-840199.CEL

4

Low

42.59

0/0/7

RE13-000058-840213.CEL

2

Low

43.01

42.81

0.69

0/1/6

RE13-000059-840032.CEL

2

Low

42.04

0/1/6

RE13-000060-840236.CEL

2

Low

43.37

0/1/6

   

Mean:

42.60

1.18

 
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BMC Medical Genomics

ISSN: 1755-8794

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