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Table 3 SNVs and indels in relevance to cancer

From: Whole genome sequencing reveals potential targets for therapy in patients with refractory KRASmutated metastatic colorectal cancer

Sample

Chr

Gene name

Position

Coding event

Sequence change

Substitution

CLN2

3

CPB1

150045158

SNV

G/A

R231Q

 

6

ESR1

152423875

SNV

C/T

T431I

 

10

TCF7L2

114907771

SNV

G/A

G424E

 

11

INPPL1

71621016

SNV

A/G

E567G

 

12

KRAS

25289548

SNV

C/T

G13D

 

14

TGFβ3

75495381

SNV

G/T

Q381K

 

18

BCL2

59136317

SNV

C/A

W188L

 

18

PTPRM

8384547

SNV

G/A

V1415M

 

10

MYST4

76460457

SNV

C/T

R1957W

 

18

SMAD4

46858795

SNV

T/G

L540R

 

19

SHANK1

55864301

SNV

G/A

R910C

 

21

HUNK

32293208

SNV

G/A

R662Q

 

3

PIK3CA

180399422

SNV

G/A

NA

 

1

PTPRC

196985273

SNV

G/A

S852N

 

13

MLNR

48693327

Indel

cccgg−/−ccgcc

Insertion

 

2

SLC4A10

162427730

Indel

atcag−/−aaaa

Insertion

 

6

UTRN

145111149

Indel

AAAT-g-GGAAA

Frameshift

 

7

HNRNPA2B1

26202550

Indel

CAGAT-cctcc-TCTAA

Frameshift

CLN3

1

ARID1A

26973896

SNV

G/T

E1531

 

2

LRP2

169845248

SNV

T/C

N400S

 

3

MITF

70011193

SNV

C/G

S92C

 

4

INPP4B

143222686

SNV

C/A

E864

 

5

GPR98

89974441

SNV

G/T

V787L

 

7

CYLN2

73409559

SNV

C/A

S344Y

 

10

PTPRE

129758044

SNV

G/A

R369Q

 

12

KRAS

25289551

SNV

C/T

G12D

 

4

MAML3

26202550

Indel

AAAT-ctg-CTGCT

AA_Deletion

 

6

PGC

140871034

Indel

CCTGC-aga-AGAGC

AA_Deletion

CLN4

1

ARID4B

233412380

SNV

C/A

R826M

 

3

PIK3CA

180434779

SNV

A/G

H1048R

 

4

KDR

55655861

SNV

G/A

R946C

 

5

APC

112129944

SNV

G/T

G53V

 

5

APC

112201150

SNV

C/T

Q654

 

5

APC

112203580

SNV

G/T

E1464

 

5

APC

112205360

SNV

A/G

K2057R

 

6

PTCRA

42998820

SNV

G/T

V46F

 

12

KRAS

25289552

SNV

C/A

G12C

 

2

HOXD9

176696536

Indel

cagcc-/gcagc

Insertion