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Figure 4 | BMC Medical Genomics

Figure 4

From: Concordance of deregulated mechanisms unveiled in underpowered experiments: PTBP1 knockdown case study

Figure 4

CROSS-STUDIES concordance of PTBP1-KD associated mechanisms found by N-of-1- pathways and conventional methods in breast and ovarian cancer cell lines using neuronal cell line mechanisms as Gold Standard. We compared mechanisms unveiled by N-of-1-pathways and DEG Enrichment in neuronal cell lines to those associated in breast and ovarian cancer cell lines and found by all three methods. We set RNA-Seq neuronal cell related results as a 'Proxy' Gold Standard (Proxy GS; Methods) and generated precision-recall curves using GO-BP semantic similarity overlap (GO-ITS ≥ 0.7; Methods).

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