Table 1 Illustration of 3 datasets
From: PDEGEM: Modeling non-uniform read distribution in RNA-Seq data
Dataset | Subdataset | Platform | read length | mapping | |
|---|---|---|---|---|---|
Dataset 1 | Wold | w1:Brain w2:Liver w3:Muscle | Illumina/Solexa | 25 bp | Seqmap |
| Â | Burge | b1:Group 1 b2:Group 2 b3:Group 3 | Illumina/Solexa | 32 bp | Seqmap |
| Â | Grimmond | g1:EB g2:ES | SOLiD | 35 bp | SOC |
Dataset 2 | Synthetic spike-in RNA-Seq | Illumina/Solexa | 36 bp | Bowtie | |
Dataset 3 | Two samples from human kidney Two samples from human liver | Illumina | 36 bp | Bowtie | |
Dataset 4 | Three samples from mouse liver Three samples from mouse Muscle Two samples from human Brain | SOLiD | 25 bp | Seqmap | |