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Table 1 Illustration of 3 datasets

From: PDEGEM: Modeling non-uniform read distribution in RNA-Seq data

Dataset Subdataset Platform read length mapping
Dataset 1 Wold w1:Brain
w2:Liver
w3:Muscle
Illumina/Solexa 25 bp Seqmap
  Burge b1:Group 1
b2:Group 2
b3:Group 3
Illumina/Solexa 32 bp Seqmap
  Grimmond g1:EB g2:ES SOLiD 35 bp SOC
Dataset 2 Synthetic spike-in RNA-Seq Illumina/Solexa 36 bp Bowtie
Dataset 3 Two samples from human kidney
Two samples from human liver
Illumina 36 bp Bowtie
Dataset 4 Three samples from mouse liver
Three samples from mouse Muscle
Two samples from human Brain
SOLiD 25 bp Seqmap