Table 1 Codon and gene coverage of the 1052-amplicon panel

ABL1

ENST00000318560

85-505

AKT1

ENST00000349310

1-96, 146-189, 277-391, 455-481

AKT2

ENST00000392038

192-320

BRAF

ENST00000288602

393-664

CDH1*

ENST00000261769

1-883

CDK4

ENST00000257904

1-73, 228-273

CDKN2A*

ENST00000446177

1-153

CEBPA*

ENST00000498907

1-359

CREBBP

ENST00000262367

1-29, 853-929, 1328-1465, 1725-1761, 2196-2299

CTNNB1*

ENST00000396185

1-782

EGFR*

ENST00000275493

1-1211

ERBB2

ENST00000269571

147-215

FES

ENST00000328850

72-223

FGFR1*

ENST00000447712

1-823

FGFR3

ENST00000340107

206-760

FLT3

ENST00000241453

437-685, 807-885

FOXL2

ENST00000330315

91-158

GATA1

ENST00000376670

1-200

GNA11

ENST00000078429

202-245

GNAQ

ENST00000286548

159-245

HIF1A*

ENST00000337138

1-827

HRAS*

ENST00000397594

1-150

IDH1

ENST00000345146

41-174, 284-331

IDH2

ENST00000330062

125-178

IKBKB

ENST00000520810

311-375, 580-662

JAK2

ENST00000381652

443-711, 858-903

KIT*

ENST00000288135

1-977

KRAS*

ENST00000256078

1-150

MEN1*

ENST00000377326

1-611

MET

ENST00000318493

981-1330

MPL

ENST00000372470

180-230, 440-522

NF2*

ENST00000361166

1-579

NOTCH1*

ENST00000277541

21-2556

NPM1

ENST00000393820

47-118

NRAS

ENST00000369535

1-97

PAX5

ENST00000358127

71-137, 304-367

PDGFRA

ENST00000257290

552-960, 1041-1090

PIK3CA

ENST00000263967

21-106, 301-353, 418-582, 672-729, 889-1069

PIK3R1*

ENST00000521657

1-725

PTCH1*

ENST00000331920

1-1448

PTEN*

ENST00000371953

1-404

PTPN11

ENST00000351677

46-111, 483-533

RB1*

ENST00000267163

1-491, 500-929

RET

ENST00000355710

627-694, 870-934

SMAD4*

ENST00000342988

1-302, 319-553

SMARCB1*

ENST00000263121

1-386

SMO*

ENST00000249373

1-788

SRC*

ENST00000445403

1-537

STK11*

ENST00000326873

1-434

TP53*

ENST00000269305

1-394

VHL

ENST00000256474

1-52, 104-214