Figure 5

Whole chromosome 17 CN trace from breast cancer sample TSB00095. The figure is captured by the Nexus Express for Affymetrix software version 3. A) is a karyoview of the chromosome where the blue bar represents a gain and the annotation tracks below highlight genes and other genomic features of interest. B) is the log2ratio plot and C) the BAF plot. It shows CNNLOH of the entire chromosome with duplication of the distal region of the long arm of chromosome 17. This patient also has a TP53:p.R213*:c.637C > T SM at 17p13.1 annotated as a red star on karyoview.