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Table 3 The top transcripts associated with the Chr9p21 region from the SKAT test

From: The cis and trans effects of the risk variants of coronary artery disease in the Chr9p21 region

Transcript N SKAT SKAT SKAT FDR q value Gene Location
Beta(1,25) Beta(1,1) Beta(0.5,0.5)
P value P value P value
Top transcripts when SKAT_Beta(1, 25) was used
ENST00000331200 800 8.19e-07 0.905 0.416 0.0276 DUT 15q21
ENST00000361365 781 1.55e-06 0.762 0.360 0.0276 EIF1AY Yq11
ENST00000427043 796 5.79e-06 0.909 0.490 0.0685 CASP14 19p13
ENST00000374736 801 1.01e-05 0.719 0.387 0.0893 ABCA1 9q31
Top transcript when SKAT_Beta(1, 1) was used
ENST00000412271 749 0.608659 3.05e-05 3.38e-05 0.9998 DHRS9 2q31
Top transcript when SKAT_Beta(0.5, 0.5) was used
ENST00000412271 749 0.608659 3.05e-05 3.38e-05 0.9998 DHRS9 2q31
cis transcript
ENST00000428597 801 0.47 0.002013 0.001907 1 ANRIL 9p21