Table 3 The top transcripts associated with the Chr9p21 region from the SKAT test
From: The cis and trans effects of the risk variants of coronary artery disease in the Chr9p21 region
Transcript | N | SKAT | SKAT | SKAT | FDR q value | Gene | Location |
|---|---|---|---|---|---|---|---|
Beta(1,25) | Beta(1,1) | Beta(0.5,0.5) | |||||
P value | P value | P value | |||||
Top transcripts when SKAT_Beta(1, 25) was used | |||||||
ENST00000331200 | 800 | 8.19e-07 | 0.905 | 0.416 | 0.0276 | DUT | 15q21 |
ENST00000361365 | 781 | 1.55e-06 | 0.762 | 0.360 | 0.0276 | EIF1AY | Yq11 |
ENST00000427043 | 796 | 5.79e-06 | 0.909 | 0.490 | 0.0685 | CASP14 | 19p13 |
ENST00000374736 | 801 | 1.01e-05 | 0.719 | 0.387 | 0.0893 | ABCA1 | 9q31 |
Top transcript when SKAT_Beta(1, 1) was used | |||||||
ENST00000412271 | 749 | 0.608659 | 3.05e-05 | 3.38e-05 | 0.9998 | DHRS9 | 2q31 |
Top transcript when SKAT_Beta(0.5, 0.5) was used | |||||||
ENST00000412271 | 749 | 0.608659 | 3.05e-05 | 3.38e-05 | 0.9998 | DHRS9 | 2q31 |
cis transcript | |||||||
ENST00000428597 | 801 | 0.47 | 0.002013 | 0.001907 | 1 | ANRIL | 9p21 |