Table 2 Alignment and processing statistics for sequencing read data
From: High-resolution characterization of sequence signatures due to non-random cleavage of cell-free DNA
| Â | I1_M_plasma | G1_M_plasma | ||
|---|---|---|---|---|
Number of reads | Proportion of total | Number of reads | Proportion of total | |
Total | 2663662496 | 1 | 1920061404 | 1 |
Aligned | 2462191486 | 0.92 | 1758285925 | 0.92 |
Uniquely aligned | 2366811398 | 0.89 | 1686208471 | 0.88 |
Non-duplicates | 2312044964 | 0.87 | 1641590824 | 0.85 |
MAPQ > = 13 | 2225473345 | 0.84 | 1585773977 | 0.83 |
Proper pairs | 1112724850 | - | 792884037 | - |
Whole-genome coverage | 74.2 X | Â | 52.6 X | Â |
| Â | I1_M_cellular | G1_M_cellular | ||
| Â | Number of reads | Proportion of total | Number of reads | Proportion of total |
Total | 1091176962 | 1 | 903802456 | 1 |
Aligned | 1056822490 | 0.97 | 888679846 | 0.98 |
Uniquely aligned | 1023380388 | 0.94 | 860508538 | 0.95 |
Non-duplicates | 1019233466 | 0.93 | 858226379 | 0.95 |
MAPQ > = 13 | 983181449 | 0.90 | 838372718 | 0.93 |
Proper pairs | 491581650 | - | 419209864 | - |
Whole-genome coverage | 32.6 X | 27.4 X | ||