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Table 2 SVM diagnosis for benchmark data under 5-fold cross validation

From: Diagnostic biases in translational bioinformatics

Algorithm

Accuracy ± std (%)

Sensitivity ± std (%)

Specificity ± std (%)

NPR ± std (%)

PPR ± std (%)

  

BreastIBC data

   

SVM-linear

74.56 ± 04.52

97.14 ± 06.39

16.67 ± 23.67

NaN

75.70 ± 06.52

SVM-rbf

72.56 ± 03.63

100.0 ± 00.00

00.00 ± 00.00

NaN

72.56 ± 03.63

SVM-quad

74.56 ± 04.52

97.14 ± 06.39

16.67 ± 23.67

NaN

75.70 ± 06.52

SVM-rbf2

72.83 ± 10.92

85.71 ± 14.29

40.00 ± 09.13

63.33 ± 34.16

78.65 ± 05.88

SVM-mlp

45.67 ± 18.09

48.10 ± 22.99

40.00 ± 09.13

25.67 ± 14.02

65.33 ± 12.16

  

HCC data

   

SVM-linear

94.02 ± 01.43

95.81 ± 03.83

92.42 ± 05.21

96.17 ± 03.50

92.39 ± 05.00

SVM-rbf

52.00 ± 00.75

100.0 ± 00.00

00.00 ± 00.00

NaN

52.00 ± 00.75

SVM-quad

82.05 ± 10.66

77.00 ± 10.77

87.52 ± 12.21

77.87 ± 10.32

87.38 ± 11.89

SVM-rbf2

89.90 ± 04.32

92.86 ± 08.75

87.17 ± 06.48

93.60 ± 07.25

87.33 ± 05.32

SVM-mlp

51.87 ± 10.96

46.00 ± 15.80

58.29 ± 10.06

50.43 ± 08.72

53.44 ± 14.68

  

Kidney data

   

SVM-linear

90.23 ± 02.35

96.84 ± 03.07

44.07 ± 06.63

71.46 ± 16.90

92.38 ± 00.71

SVM-rbf

87.48 ± 00.44

100.0 ± 00.00

00.00 ± 00.00

NaN

87.48 ± 00.44

SVM-quad

87.47 ± 01.70

94.47 ± 01.20

17.47 ± 07.89

50.00 ± 21.21

89.21 ± 00.80

SVM-rbf2

87.48 ± 00.44

100.0 ± 00.00

00.00 ± 00.00

NaN

87.48 ± 00.44

SVM-mlp

53.39 ± 06.79

54.32 ± 07.79

46.92 ± 10.08

13.02 ± 02.95

87.67 ± 02.47