Table 1 Summary of the number of the various types of SVs detected in the DNA sequencing analysis and their expression as detected by RNA-Seq or microarray studies (see text for details)
| Â | SVs (DNA level) | Detected by RNA-Seq | Differentially expressed (microarray) |
|---|---|---|---|
A: Somatically derived | |||
5′-truncated | 167 | 29 | NA |
coding-gene-fusion | 45 | 8 | NA |
Uncharacterized RNA | 216 | 33 | NA |
alternative 5′UTR | 30 | 1 | 7 |
alternative 3′UTR | 47 | 2 | 14 |
Promoters | 172 | NA | 21 |
Total | 677 | 73 | 42 |
B: Germline derived | |||
5′-truncated | 41 | 10 | NA |
coding-gene-fusion | 7 | 0 | NA |
Uncharacterized RNA | 68 | 14 | NA |
alternative 5′UTR | 15 | 1 | 5a |
alternative 3′UTR | 27 | 5 | 4a |
Promoters | 226 | NA | 16 |
Total | 384 | 30 | 25 |