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Table 1 Summary of the number of the various types of SVs detected in the DNA sequencing analysis and their expression as detected by RNA-Seq or microarray studies (see text for details)

From: Integrated sequence and expression analysis of ovarian cancer structural variants underscores the importance of gene fusion regulation

  SVs (DNA level) Detected by RNA-Seq Differentially expressed (microarray)
A: Somatically derived
5′-truncated 167 29 NA
coding-gene-fusion 45 8 NA
Uncharacterized RNA 216 33 NA
alternative 5′UTR 30 1 7
alternative 3′UTR 47 2 14
Promoters 172 NA 21
Total 677 73 42
B: Germline derived
5′-truncated 41 10 NA
coding-gene-fusion 7 0 NA
Uncharacterized RNA 68 14 NA
alternative 5′UTR 15 1 5a
alternative 3′UTR 27 5 4a
Promoters 226 NA 16
Total 384 30 25
  1. aOverlap between RNA-Seq and microarray detection