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Table 1 ENCODE RNA-Seq data used in this study

From: Differential expression analysis of human endogenous retroviruses based on ENCODE RNA-seq data

Cell type

Tissue

Condition

 

Number of replicates

Tier

CSHL paired-end

Caltech single-end

Caltech paired-end

A549

Epithelium

Cancer

2

2

-

-

B-cells CD20+

Blood

Normal

2

2

-

-

GM12878

Blood

Normal

1

2

2

2

H1-hESC

ESC

Normal

1

2

2

4

HUVEC

Blood vessel

Normal

2

2

2

2

HeLa-S3

Cervix

Cancer

2

2

2

2

HepG2

Liver

Cancer

2

2

2

2

IMR90

Lung

Normal

2

2

-

-

K562

Blood

Cancer

1

2

2

2

MCF-7

Breast

Cancer

2

2

-

3

Monocytes CD14+

Monocytes

Normal

2

2

-

-

SK-N-SH

Brain

Cancer

2

2

-

-

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BMC Medical Genomics

ISSN: 1755-8794

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