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Table 4 AUC under the holdout approach and different genotype-based predictors learned using only the 100 top SNPs

From: A comparison of genomic profiles of complex diseases under different models

Disease NBC sSVM AdaBoostM1 C4.5 20RF lasso RR LR GRS LR wGRS GLM AIC
BD 0.53 0.551 0.552 0.524 0.535 0.552 0.553 0.523 0.534 0.551
CAD 0.573 0.582 0.56 0.532 0.574 0.566 0.569 0.556 0.568 0.567
HT 0.541 0.543 0.545 0.538 0.539 0.559 0.548 0.527 0.535 0.553
IBD 0.568 0.574 0.587 0.522 0.557 0.585 0.587 0.56 0.569 0.577
RA 0.651 0.715 0.734 0.694 0.689 0.725 0.73 0.614 0.638 0.736
T1D 0.675 0.79 0.777 0.747 0.771 0.777 0.79 0.669 0.686 0.793
T2D 0.566 0.569 0.565 0.541 0.566 0.575 0.571 0.566 0.576 0.556
  1. The highest AUC for each disease is shown in boldface