A comparison of genomic profiles of complex diseases under different models

BMC Medical Genomics

Table 4 AUC under the holdout approach and different genotype-based predictors learned using only the 100 top SNPs

Disease	NBC	sSVM	AdaBoostM1	C4.5	20RF	lasso	RR	LR GRS	LR wGRS	GLM AIC
BD	0.53	0.551	0.552	0.524	0.535	0.552	0.553	0.523	0.534	0.551
CAD	0.573	0.582	0.56	0.532	0.574	0.566	0.569	0.556	0.568	0.567
HT	0.541	0.543	0.545	0.538	0.539	0.559	0.548	0.527	0.535	0.553
IBD	0.568	0.574	0.587	0.522	0.557	0.585	0.587	0.56	0.569	0.577
RA	0.651	0.715	0.734	0.694	0.689	0.725	0.73	0.614	0.638	0.736
T1D	0.675	0.79	0.777	0.747	0.771	0.777	0.79	0.669	0.686	0.793
T2D	0.566	0.569	0.565	0.541	0.566	0.575	0.571	0.566	0.576	0.556

ISSN: 1755-8794