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Table 2 Top 10 well-estimated gene list

From: Identifying subtype-specific associations between gene expression and DNA methylation profiles in breast cancer

Overall HER2 positive Luminal A Luminal B Triple negative
TRA2B MMP1 PSMD3 PSMD3 ABCC12
HNRNPK SPDYC GPD1 CDC6 SLC18A2
RAB5B ERBB2 ERBB2 RPL19 IVD
HNRNPK.1 ELOVL2 UGT1A6 ERBB2 ABCA12
HNRNPK.2 SERPINA5 BMPR1B CACNG6 DNALI1
SEC11A NPY1R CTSE PCK1 DEGS2
SF3A1 SEMA3E CCL21 PSMB3 UCHL1
SRP14 AKR1B10 TAT PIP4K2B NEIL1
CDC42 UGT8 RPL19 CALML3 MAGOH
NRF1 EPO ATP6V0A4 ABCC12 HGD
  1. Genes having the smallest prediction error over all target genes are shown in column Overall, and genes that show prediction improvement when estimated using kernel weighted lasso over the plain lasso are shown for each subtype in the remaining columns