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Table 2 Top 10 well-estimated gene list

From: Identifying subtype-specific associations between gene expression and DNA methylation profiles in breast cancer

Overall

HER2 positive

Luminal A

Luminal B

Triple negative

TRA2B

MMP1

PSMD3

PSMD3

ABCC12

HNRNPK

SPDYC

GPD1

CDC6

SLC18A2

RAB5B

ERBB2

ERBB2

RPL19

IVD

HNRNPK.1

ELOVL2

UGT1A6

ERBB2

ABCA12

HNRNPK.2

SERPINA5

BMPR1B

CACNG6

DNALI1

SEC11A

NPY1R

CTSE

PCK1

DEGS2

SF3A1

SEMA3E

CCL21

PSMB3

UCHL1

SRP14

AKR1B10

TAT

PIP4K2B

NEIL1

CDC42

UGT8

RPL19

CALML3

MAGOH

NRF1

EPO

ATP6V0A4

ABCC12

HGD

  1. Genes having the smallest prediction error over all target genes are shown in column Overall, and genes that show prediction improvement when estimated using kernel weighted lasso over the plain lasso are shown for each subtype in the remaining columns
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BMC Medical Genomics

ISSN: 1755-8794

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