Table 2 Performance of the nearest SCC classifying independent SSA/P and HP microarray samples using three signatures
Platforms | Concordant genes | Signature size | Signature | Illum.a errors | Affy.b errors |
|---|---|---|---|---|---|
Training: RNA-seq Testing: Illumina | C4BPA,CEMIP,CHGA,CLDN1,CPE,DPP10,FSIP2,GRAMD1B,GRIN2D,IL2RG,KIZ,KLK7,MEGF6,MYCN,NTRK2,PLA2G16,RAMP1,SBSPON,SEMG1,SLC7A9,SPIRE1,TM4SF4 | 18 | C4BPA,CHGA,CLDN1,CPE,DPP10,GRAMD1B,GRIN2D,KIZ,KLK7,MEGF6,MYCN,NTRK2,PLA2G16,SBSPON,SEMG1,SLC7A9,SPIRE1,TM4SF4 | 0 | – |
Training: RNA-seq Testing: Affymetrix | CLDN1,FOXD1,IDO1,IL2RG,KIZ,LMO4,MEGF6,NTRK2,PIK3R3,PLA2G16,PRUNE2,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2,TPD52L1,TRIB2,ZIC2 | 16 | CLDN1,FOXD1,KIZ,MEGF6,NTRK2,PIK3R3,PLA2G16,PRUNE2,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2,TPD52L1,TRIB2 | – | 3 |
Training: RNA-seq Testing: Illumina and Affymetrix | CHFR,CHGA,CLDN1,IL2RG,KIZ,MEGF6,NTRK2,PLA2G16,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2,VSIG1,ZIC2 | 13 | CHFR,CHGA,CLDN1,KIZ,MEGF6,NTRK2,PLA2G16,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2 | 0 | 3 |