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Table 2 Performance of the nearest SCC classifying independent SSA/P and HP microarray samples using three signatures

From: Platform-independent gene expression signature differentiates sessile serrated adenomas/polyps and hyperplastic polyps of the colon

Platforms Concordant genes Signature size Signature Illum.a
errors
Affy.b
errors
Training: RNA-seq
Testing: Illumina
C4BPA,CEMIP,CHGA,CLDN1,CPE,DPP10,FSIP2,GRAMD1B,GRIN2D,IL2RG,KIZ,KLK7,MEGF6,MYCN,NTRK2,PLA2G16,RAMP1,SBSPON,SEMG1,SLC7A9,SPIRE1,TM4SF4 18 C4BPA,CHGA,CLDN1,CPE,DPP10,GRAMD1B,GRIN2D,KIZ,KLK7,MEGF6,MYCN,NTRK2,PLA2G16,SBSPON,SEMG1,SLC7A9,SPIRE1,TM4SF4 0
Training: RNA-seq
Testing: Affymetrix
CLDN1,FOXD1,IDO1,IL2RG,KIZ,LMO4,MEGF6,NTRK2,PIK3R3,PLA2G16,PRUNE2,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2,TPD52L1,TRIB2,ZIC2 16 CLDN1,FOXD1,KIZ,MEGF6,NTRK2,PIK3R3,PLA2G16,PRUNE2,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2,TPD52L1,TRIB2 3
Training: RNA-seq
Testing: Illumina and Affymetrix
CHFR,CHGA,CLDN1,IL2RG,KIZ,MEGF6,NTRK2,PLA2G16,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2,VSIG1,ZIC2 13 CHFR,CHGA,CLDN1,KIZ,MEGF6,NTRK2,PLA2G16,PTAFR,SBSPON,SEMG1,SLC7A9,SPIRE1,TACSTD2 0 3
  1. aIllumina microarrays
  2. bAffymetrix HGU133plus2 microarrays