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Table 4 List of master-regulator molecules (including complexes and modified forms) that have passed all criteria

From: Computational master-regulator search reveals mTOR and PI3K pathways responsible for low sensitivity of NCI-H292 and A427 lung cancer cell lines to cytotoxic action of p53 activator Nutlin-3

Master molecule name

Gene symbol

logFC

Composite score

Master Regulator Score

FDR

Z-Score

Ranks sum

Cdk1(h)

CDK1

0.878

9.758

0.821

0.000

10.264

0

Cdk2(h)

CDK2

0.918

11.485

0.821

0.000

10.264

2

c-Fos(h)

FOS

0.660

9.973

0.821

0.000

10.264

4

Chk1(h)

CHEK1

0.909

9.186

0.821

0.000

10.264

6

cyclinB1(h)

CCNB1

1.380

9.670

0.821

0.000

10.264

8

mTOR(h):raptor(h)

MTOR

0.773

9.664

0.821

0.000

9.986

11

mTOR(h)

MTOR

0.773

9.664

0.821

0.000

9.986

13

Chk1(h){pS345}

CHEK1

0.909

9.186

0.821

0.000

9.707

15

GSK3beta(h){p}

GSK3B

0.937

9.181

0.821

0.000

4.971

15

E2-C(h)

UBE2C

2.270

9.919

0.821

0.000

8.593

17

p70S6K1-alpha2(h)

RPS6KB1

0.658

9.644

0.821

0.000

3.857

33

cyclinA:Cdk2{pT160}

CDK2

0.918

11.485

0.672

0.008

4.320

34

GSK3beta(h){pS9}

GSK3B

0.937

9.181

0.821

0.000

3.857

35

cyclinD:Cdk4{pT172}

CCND1

0.910

9.188

0.672

0.008

4.320

37

PKAc(h):GSK3beta(h)

GSK3B

0.937

9.181

0.821

0.000

3.578

40

cyclinD1(h):Cdk4(h)

CCND1

0.910

9.188

0.672

0.014

3.931

42

securin(h)

PTTG1

0.979

9.606

0.821

0.000

3.578

42

cyclinD1:Cdk4:PAK1

CCND1

0.910

9.188

0.672

0.014

3.905

45

Cdk4(h):cyclinD1a(h)

CCND1

0.910

9.188

0.672

0.014

3.852

47

cyclinE(h):Cdk2(h)

CDK2

0.918

11.485

0.672

0.022

3.510

56

p70S6K1(h){pT389}

RPS6KB1

0.658

9.644

0.821

0.000

2.185

89

p70S6K1(h)

RPS6KB1

0.658

9.644

0.821

0.000

1.628

146

H-Ras:GTP:Raf-1{p}

HRAS

1.381

8.501

0.589

0.041

1.490

194