Table 1 The pharmacogenomic landscape of 27 bladder cancer cell lines
Cell Lines | Genomic Features | Drug Sensitivity | |||||||
|---|---|---|---|---|---|---|---|---|---|
Mut | Del | Amp | Up-reg | Down-reg | CTRP | GDSC | CCLE | GDBC | |
5637 | 1400 | 117 | 85 | 1123 | 1404 | 463 | 98 | 24 | 10 |
639Â V | 299 | 135 | 203 | 1430 | 1235 | 467 | 99 | 24 | 0 |
647Â V | 96 | 342 | 218 | 1394 | 1143 | 451 | 99 | 0 | 0 |
BC3C | NA | 158 | 37 | 1298 | 1277 | 468 | 0 | 0 | 0 |
BFTC905 | 92 | 549 | 312 | 1201 | 1394 | 357 | 99 | 0 | 0 |
CAL29 | 73 | 119 | 637 | 1151 | 1420 | 404 | 0 | 0 | 0 |
HS172T | 47 | 62 | 9 | 1817 | 1733 | 0 | 0 | 0 | 0 |
HT1197 | 744 | 113 | 266 | 1898 | 1498 | 443 | 99 | 24 | 8 |
HT1376 | 775 | 242 | 455 | 1583 | 1614 | 465 | 99 | 24 | 7 |
J82 | 760 | 324 | 135 | 1166 | 1191 | 470 | 95 | 22 | 9 |
JMSU1 | 96 | 272 | 121 | 1620 | 1332 | 463 | 0 | 24 | 0 |
KMBC2 | 121 | 320 | 122 | 1496 | 1616 | 474 | 0 | 24 | 0 |
KU1919 | 91 | 124 | 354 | 1164 | 1330 | 461 | 99 | 0 | 0 |
RT112 | 903 | 889 | 133 | 1466 | 1348 | 442 | 99 | 24 | 0 |
RT11284 | 72 | 163 | 20 | 1371 | 1177 | 0 | 0 | 0 | 0 |
RT4 | 1094 | 115 | 30 | 1458 | 1384 | 458 | 98 | 24 | 10 |
SCABER | 85 | 144 | 173 | 1224 | 1306 | 455 | 0 | 24 | 0 |
SW1710 | 772 | 161 | 35 | 1366 | 1334 | 384 | 99 | 0 | 0 |
SW780 | 895 | 187 | 30 | 1319 | 1455 | 0 | 99 | 0 | 11 |
T24 | NA | 121 | 7 | 1315 | 982 | 473 | 99 | 24 | 8 |
TCCSUP | 720 | 136 | 207 | 2040 | 1685 | 467 | 99 | 24 | 0 |
UBLC1 | 73 | NA | NA | 1232 | 1591 | 467 | 0 | 0 | 0 |
UMUC1 | 79 | 217 | 331 | 1928 | 1591 | 449 | 0 | 0 | 0 |
UMUC3 | 879 | 175 | 83 | 1456 | 1063 | 465 | 95 | 24 | 10 |
VMCUB1 | 959 | 128 | 160 | 1428 | 1586 | 468 | 99 | 0 | 0 |
253Â J | 1624 | NA | NA | 1406 | 1569 | 410 | 0 | 0 | 4 |
253Â JBV | 72 | NA | NA | 1187 | 1392 | 377 | 0 | 0 | 12 |