Table 3 Results for pairwise/binary classification between sub-populations in each continent
Continent | Sub-populations | Number of SNPs | Correlation Threshold | Accuracy (80–20) |
|---|---|---|---|---|
America | PUR-PEL | 56 | 0.76 | 100.00% |
PUR-MXL | 44 | 0.72 | 93.33% | |
PUR-CLM | 89 | 0.83 | 66.67% | |
CLM-PEL | 96 | 0.84 | 97.06% | |
CLM-MXL | 37 | 0.69 | 74.07% | |
PEL-MXL | 96 | 0.84 | 84.00% | |
Europe | GBR-FIN | 15 | 0.47 | 78.38% |
GBR-IBS | 63 | 0.80 | 66.67% | |
GBR-CEU | 30 | 0.64 | 67.57% | |
GBR-TSI | 24 | 0.61 | 76.92% | |
FIN-IBS | 82 | 0.83 | 83.33% | |
FIN-CEU | 130 | 0.88 | 80.00% | |
FIN-TSI | 75 | 0.82 | 90.48% | |
IBS-CEU | 47 | 0.75 | 71.43% | |
IBS-TSI | 82 | 0.83 | 77.27% | |
CEU-TSI | 31 | 0.67 | 73.81% | |
East Asia | CHS-CDX | 44 | 0.73 | 64.10% |
CHS-KHV | 12 | 0.41 | 68.29% | |
CHS-CHB | 30 | 0.66 | 64.29% | |
CHS-JPT | 83 | 0.84 | 73.81% | |
CDX-KHV | 30 | 0.66 | 68.42% | |
CDX-CHB | 120 | 0.87 | 76.92% | |
CDX-JPT | 120 | 0.87 | 87.18% | |
KHV-CHB | 62 | 0.79 | 75.61% | |
KHV-JPT | 92 | 0.85 | 82.93% | |
CHB-JPT | 83 | 0.84 | 71.43% | |
South Asia | PJL-BEB | 29 | 0.65 | 74.29% |
PJL-STU | 57 | 0.78 | 62.50% | |
PJL-ITU | 29 | 0.65 | 70.00% | |
PJL-GIH | 153 | 0.89 | 100.00% | |
BEB-STU | 42 | 0.72 | 72.97% | |
BEB-ITU | 139 | 0.88 | 70.27% | |
BEB-GIH | 113 | 0.86 | 100.00% | |
STU-ITU | 29 | 0.65 | 64.29% | |
STU-GIH | 79 | 0.82 | 100.00% | |
ITU-GIH | 79 | 0.82 | 100.00% | |
Africa | ACB-GWD | 47 | 0.76 | 76.74% |
ACB-ESN | 20 | 0.56 | 79.49% | |
ACB-MSL | 46 | 0.75 | 71.43% | |
ACB-YRI | 43 | 0.72 | 80.49% | |
ACB-LWK | 60 | 0.79 | 79.49% | |
ACB-ASW | 15 | 0.49 | 81.48% | |
GWD-ESN | 46 | 0.75 | 77.27% | |
GWD-MSL | 73 | 0.82 | 72.50% | |
GWD-YRI | 132 | 0.88 | 100.00% | |
GWD-LWK | 132 | 0.88 | 100.00% | |
GWD-ASW | 132 | 0.88 | 96.88% | |
ESN-MSL | 102 | 0.86 | 69.44% | |
ESL-YRI | 132 | 0.88 | 100.00% | |
ESN-LWK | 132 | 0.88 | 100.00% | |
ESN-ASW | 132 | 0.88 | 96.43% | |
MSL-YRI | 38 | 0.71 | 100.00% | |
MSL-LWK | 132 | 0.88 | 100.00% | |
MSL-ASW | 73 | 0.82 | 91.67% | |
YRI-LWK | 28 | 0.65 | 78.57% | |
YRI-ASW | 146 | 0.89 | 90.00% | |
LWK-ASW | 162 | 0.90 | 85.71% |