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Table 3 Performance comparison of different methods on the independent test set

From: Computational identification of deleterious synonymous variants in human genomes using a feature-based approach

Method

Recall

Precision

F-measure (β = 34)

AUC

IDSV

0.765

0.098

0.761

0.869

CADD

0.320

0.081

0.319

0.700

FATHMM-MKL

0.712

0.053

0.704

0.751

SilVA

0.490

0.581

0.490

0.844

DDIG-SN

0.298

0.789

0.298

0.854

TraP

0.575

0.518

0.575

0.827

  1. The highest values are highlighted in bold
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BMC Medical Genomics

ISSN: 1755-8794

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