Table 2 Top 20 upregulated mRNAs, lncRNAs, and miRNAs
From: Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma
symbol | logFC | AveExpr | t | PValue | FDR | B | |
|---|---|---|---|---|---|---|---|
mRNA | |||||||
ENSG00000167755 | KLK6 | 7.79 | 2.04 | 11.38 | 0.00 | 0.00 | 50.14 |
ENSG00000170373 | CST1 | 7.34 | 2.57 | 10.84 | 0.00 | 0.00 | 45.36 |
ENSG00000137673 | MMP7 | 7.02 | 4.16 | 9.01 | 0.00 | 0.00 | 30.34 |
ENSG00000167767 | KRT80 | 6.75 | 4.50 | 16.83 | 0.00 | 0.00 | 104.28 |
ENSG00000185269 | NOTUM | 6.67 | 2.82 | 8.13 | 0.00 | 0.00 | 23.79 |
ENSG00000123500 | COL10A1 | 6.43 | 2.48 | 9.40 | 0.00 | 0.00 | 33.40 |
ENSG00000062038 | CDH3 | 6.33 | 5.96 | 21.72 | 0.00 | 0.00 | 157.90 |
ENSG00000164379 | FOXQ1 | 5.94 | 4.48 | 11.52 | 0.00 | 0.00 | 51.46 |
ENSG00000165376 | CLDN2 | 5.90 | 5.63 | 7.41 | 0.00 | 0.00 | 18.76 |
ENSG00000164283 | ESM 1 | 5.68 | 2.10 | 23.05 | 0.00 | 0.00 | 172.24 |
ENSG00000105989 | WNT2 | 5.64 | 2.35 | 17.66 | 0.00 | 0.00 | 113.19 |
ENSG00000060718 | COL11A1 | 5.57 | 3.74 | 9.20 | 0.00 | 0.00 | 31.81 |
ENSG00000186007 | LEMD1 | 5.37 | 0.47 | 14.01 | 0.00 | 0.00 | 75.14 |
ENSG00000181577 | C6orf223 | 5.36 | 4.49 | 14.02 | 0.00 | 0.00 | 75.26 |
ENSG00000108244 | KRT23 | 5.33 | 3.67 | 5.86 | 0.00 | 0.00 | 9.46 |
ENSG00000015413 | DPEP1 | 5.29 | 6.34 | 7.84 | 0.00 | 0.00 | 21.56 |
ENSG00000175832 | ETV4 | 5.27 | 6.24 | 19.64 | 0.00 | 0.00 | 135.08 |
ENSG00000115507 | OTX1 | 5.26 | 0.59 | 15.24 | 0.00 | 0.00 | 87.64 |
ENSG00000178773 | CPNE7 | 5.04 | 3.88 | 10.47 | 0.00 | 0.00 | 42.15 |
ENSG00000185479 | KRT6B | 5.02 | 1.24 | 8.60 | 0.00 | 0.00 | 27.26 |
LncRNA | |||||||
ENSG00000214039 | LINC02418 | 7.40 | 1.88 | 9.02 | 0.00 | 0.00 | 30.43 |
ENSG00000230316 | FEZF1-AS1 | 6.45 | −0.09 | 11.22 | 0.00 | 0.00 | 48.72 |
ENSG00000253929 | CASC21 | 5.30 | −0.60 | 13.65 | 0.00 | 0.00 | 71.58 |
ENSG00000281406 | BLACAT1 | 5.15 | 1.48 | 15.00 | 0.00 | 0.00 | 85.11 |
ENSG00000229404 | LINC00858 | 4.84 | −0.95 | 10.67 | 0.00 | 0.00 | 43.88 |
ENSG00000275216 | AL161431.1 | 4.74 | 0.98 | 8.30 | 0.00 | 0.00 | 25.05 |
ENSG00000259485 | LINC02253 | 4.70 | −0.54 | 9.85 | 0.00 | 0.00 | 36.98 |
ENSG00000236081 | ELFN1-AS1 | 4.54 | 2.19 | 11.88 | 0.00 | 0.00 | 54.68 |
ENSG00000237686 | AL109615.3 | 4.44 | 0.10 | 18.56 | 0.00 | 0.00 | 122.90 |
ENSG00000245694 | CRNDE | 4.17 | 1.18 | 12.86 | 0.00 | 0.00 | 63.93 |
ENSG00000254560 | BBOX1-AS1 | 4.02 | 0.21 | 9.71 | 0.00 | 0.00 | 35.91 |
ENSG00000204876 | AC021218.1 | 3.27 | 3.70 | 9.13 | 0.00 | 0.00 | 31.18 |
ENSG00000226476 | LINC01748 | 3.02 | −0.28 | 7.36 | 0.00 | 0.00 | 18.54 |
ENSG00000262188 | LINC01978 | 3.01 | 0.53 | 9.07 | 0.00 | 0.00 | 30.80 |
ENSG00000253414 | AC124067.2 | 2.98 | 0.78 | 9.77 | 0.00 | 0.00 | 36.38 |
ENSG00000214049 | UCA1 | 2.94 | 2.88 | 5.57 | 0.00 | 0.00 | 7.82 |
ENSG00000265688 | MAFG-AS1 | 2.94 | 2.20 | 17.51 | 0.00 | 0.00 | 111.62 |
ENSG00000230061 | TRPM2-AS | 2.81 | 1.05 | 5.77 | 0.00 | 0.00 | 9.02 |
ENSG00000253161 | LINC01605 | 2.80 | 0.63 | 10.92 | 0.00 | 0.00 | 46.10 |
ENSG00000255026 | AC136475.3 | 2.71 | 1.18 | 6.52 | 0.00 | 0.00 | 13.26 |
logFC | AveExpr | t | PValue | FDR | B | ||
miRNA | |||||||
hsa-miR-374a-3p | 7.69 | 9.55 | 15.73 | 0.00 | 0.00 | 90.87 | |
hsa-miR-135b-5p | 6.45 | 5.85 | 8.48 | 0.00 | 0.00 | 26.20 | |
hsa-miR-21-5p | 6.32 | 17.44 | 27.96 | 0.00 | 0.00 | 219.16 | |
hsa-miR-19b-3p | 6.31 | 7.48 | 13.27 | 0.00 | 0.00 | 66.88 | |
hsa-miR-142-3p | 6.20 | 10.81 | 11.47 | 0.00 | 0.00 | 50.44 | |
hsa-miR-19a-3p | 6.16 | 5.36 | 10.03 | 0.00 | 0.00 | 38.20 | |
hsa-miR-424-5p | 6.07 | 6.75 | 12.54 | 0.00 | 0.00 | 59.99 | |
hsa-miR-142-5p | 6.04 | 6.12 | 12.36 | 0.00 | 0.00 | 58.34 | |
hsa-miR-542-3p | 5.74 | 7.00 | 14.22 | 0.00 | 0.00 | 75.91 | |
hsa-miR-577 | 5.59 | 5.62 | 5.91 | 0.00 | 0.00 | 9.83 | |
hsa-miR-29b-3p | 5.40 | 9.40 | 13.88 | 0.00 | 0.00 | 72.73 | |
hsa-miR-126-5p | 5.24 | 7.06 | 13.04 | 0.00 | 0.00 | 64.66 | |
hsa-miR-32-5p | 5.23 | 4.63 | 14.04 | 0.00 | 0.00 | 74.18 | |
hsa-miR-33a-5p | 5.13 | 5.14 | 7.48 | 0.00 | 0.00 | 19.30 | |
hsa-miR-582-3p | 5.08 | 8.28 | 11.93 | 0.00 | 0.00 | 54.45 | |
hsa-miR-203b-3p | 5.05 | 7.07 | 7.03 | 0.00 | 0.00 | 16.42 | |
hsa-miR-101-3p | 5.01 | 12.47 | 21.16 | 0.00 | 0.00 | 148.02 | |
hsa-miR-18a-5p | 4.99 | 4.50 | 9.33 | 0.00 | 0.00 | 32.60 | |
hsa-miR-429 | 4.93 | 8.33 | 11.45 | 0.00 | 0.00 | 50.22 | |
hsa-miR-374a-5p | 4.91 | 4.77 | 12.57 | 0.00 | 0.00 | 60.33 | |