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Table 2 Top 20 upregulated mRNAs, lncRNAs, and miRNAs

From: Integration analysis of long non-coding RNA (lncRNA) role in tumorigenesis of colon adenocarcinoma

  symbol logFC AveExpr t PValue FDR B
mRNA
 ENSG00000167755 KLK6 7.79 2.04 11.38 0.00 0.00 50.14
 ENSG00000170373 CST1 7.34 2.57 10.84 0.00 0.00 45.36
 ENSG00000137673 MMP7 7.02 4.16 9.01 0.00 0.00 30.34
 ENSG00000167767 KRT80 6.75 4.50 16.83 0.00 0.00 104.28
 ENSG00000185269 NOTUM 6.67 2.82 8.13 0.00 0.00 23.79
 ENSG00000123500 COL10A1 6.43 2.48 9.40 0.00 0.00 33.40
 ENSG00000062038 CDH3 6.33 5.96 21.72 0.00 0.00 157.90
 ENSG00000164379 FOXQ1 5.94 4.48 11.52 0.00 0.00 51.46
 ENSG00000165376 CLDN2 5.90 5.63 7.41 0.00 0.00 18.76
 ENSG00000164283 ESM 1 5.68 2.10 23.05 0.00 0.00 172.24
 ENSG00000105989 WNT2 5.64 2.35 17.66 0.00 0.00 113.19
 ENSG00000060718 COL11A1 5.57 3.74 9.20 0.00 0.00 31.81
 ENSG00000186007 LEMD1 5.37 0.47 14.01 0.00 0.00 75.14
 ENSG00000181577 C6orf223 5.36 4.49 14.02 0.00 0.00 75.26
 ENSG00000108244 KRT23 5.33 3.67 5.86 0.00 0.00 9.46
 ENSG00000015413 DPEP1 5.29 6.34 7.84 0.00 0.00 21.56
 ENSG00000175832 ETV4 5.27 6.24 19.64 0.00 0.00 135.08
 ENSG00000115507 OTX1 5.26 0.59 15.24 0.00 0.00 87.64
 ENSG00000178773 CPNE7 5.04 3.88 10.47 0.00 0.00 42.15
 ENSG00000185479 KRT6B 5.02 1.24 8.60 0.00 0.00 27.26
LncRNA
 ENSG00000214039 LINC02418 7.40 1.88 9.02 0.00 0.00 30.43
 ENSG00000230316 FEZF1-AS1 6.45 −0.09 11.22 0.00 0.00 48.72
 ENSG00000253929 CASC21 5.30 −0.60 13.65 0.00 0.00 71.58
 ENSG00000281406 BLACAT1 5.15 1.48 15.00 0.00 0.00 85.11
 ENSG00000229404 LINC00858 4.84 −0.95 10.67 0.00 0.00 43.88
 ENSG00000275216 AL161431.1 4.74 0.98 8.30 0.00 0.00 25.05
 ENSG00000259485 LINC02253 4.70 −0.54 9.85 0.00 0.00 36.98
 ENSG00000236081 ELFN1-AS1 4.54 2.19 11.88 0.00 0.00 54.68
 ENSG00000237686 AL109615.3 4.44 0.10 18.56 0.00 0.00 122.90
 ENSG00000245694 CRNDE 4.17 1.18 12.86 0.00 0.00 63.93
 ENSG00000254560 BBOX1-AS1 4.02 0.21 9.71 0.00 0.00 35.91
 ENSG00000204876 AC021218.1 3.27 3.70 9.13 0.00 0.00 31.18
 ENSG00000226476 LINC01748 3.02 −0.28 7.36 0.00 0.00 18.54
 ENSG00000262188 LINC01978 3.01 0.53 9.07 0.00 0.00 30.80
 ENSG00000253414 AC124067.2 2.98 0.78 9.77 0.00 0.00 36.38
 ENSG00000214049 UCA1 2.94 2.88 5.57 0.00 0.00 7.82
 ENSG00000265688 MAFG-AS1 2.94 2.20 17.51 0.00 0.00 111.62
 ENSG00000230061 TRPM2-AS 2.81 1.05 5.77 0.00 0.00 9.02
 ENSG00000253161 LINC01605 2.80 0.63 10.92 0.00 0.00 46.10
 ENSG00000255026 AC136475.3 2.71 1.18 6.52 0.00 0.00 13.26
   logFC AveExpr t PValue FDR B
miRNA
 hsa-miR-374a-3p 7.69 9.55 15.73 0.00 0.00 90.87
 hsa-miR-135b-5p 6.45 5.85 8.48 0.00 0.00 26.20
 hsa-miR-21-5p 6.32 17.44 27.96 0.00 0.00 219.16
 hsa-miR-19b-3p 6.31 7.48 13.27 0.00 0.00 66.88
 hsa-miR-142-3p 6.20 10.81 11.47 0.00 0.00 50.44
 hsa-miR-19a-3p 6.16 5.36 10.03 0.00 0.00 38.20
 hsa-miR-424-5p 6.07 6.75 12.54 0.00 0.00 59.99
 hsa-miR-142-5p 6.04 6.12 12.36 0.00 0.00 58.34
 hsa-miR-542-3p 5.74 7.00 14.22 0.00 0.00 75.91
 hsa-miR-577 5.59 5.62 5.91 0.00 0.00 9.83
 hsa-miR-29b-3p 5.40 9.40 13.88 0.00 0.00 72.73
 hsa-miR-126-5p 5.24 7.06 13.04 0.00 0.00 64.66
 hsa-miR-32-5p 5.23 4.63 14.04 0.00 0.00 74.18
 hsa-miR-33a-5p 5.13 5.14 7.48 0.00 0.00 19.30
 hsa-miR-582-3p 5.08 8.28 11.93 0.00 0.00 54.45
 hsa-miR-203b-3p 5.05 7.07 7.03 0.00 0.00 16.42
 hsa-miR-101-3p 5.01 12.47 21.16 0.00 0.00 148.02
 hsa-miR-18a-5p 4.99 4.50 9.33 0.00 0.00 32.60
 hsa-miR-429 4.93 8.33 11.45 0.00 0.00 50.22
 hsa-miR-374a-5p 4.91 4.77 12.57 0.00 0.00 60.33