Table 5 Several top SNPs and their associated risk for the breast cancer dataset

1

rs17088238

4

58051368

1.83

-

FALSE

-

2

rs9616659

22

48274771

1.7

-

FALSE

C22orf34

3

SNP-A-1916909

–

–

1.67

-

TRUE

-

4

rs1830876

6

51173716

1.67

-

TRUE

-

5

rs1627802

11

15148537

1.61

-

FALSE

INSC

6

rs1514867

5

17797421

1.5

+

TRUE

LOC105374666

7

SNP-A-4276906

–

–

1.5

+

TRUE

-

8

rs10752369

10

15410484

1.49

-

FALSE

FAM171A1

9

rs13129525

4

141069061

1.48

-

TRUE

MAML3

10

rs32489

5

55634181

1.48

-

FALSE

LOC105378977

11

rs2183902

10

74749286

1.48

-

FALSE

CFAP70

12

rs4679029

3

38317718

1.48

-

FALSE

SLC22A14

13

SNP-A-1856501

–

–

1.43

-

FALSE

-

14

rs1459375

10

126998027

1.43

-

FALSE

-

15

rs17450114

5

59517635

1.43

-

FALSE

PDE4D

16

rs10941538

5

17820309

1.39

+

FALSE

LOC105374666

17

rs10192060

2

206075348

1.36

-

TRUE

PARD3B

18

rs10517460

4

37643478

1.34

-

FALSE

TBC1D1

19

rs954765

6

102608467

1.31

+

FALSE

GRIK2

20

rs3867286

11

69483918

1.3

+

TRUE

-

21

rs2069662

5

75952359

1.3

+

FALSE

F2RL2,IQGAP2

22

rs7579373

2

67252044

1.28

+

FALSE

LINC01828

23

rs7205704

16

27308394

1.27

-

FALSE

-

24

rs2274055

13

97925497

1.27

-

FALSE

STK24

25

rs1937991

10

42281298

1.27

-

FALSE

CCNYL2

26

rs17038799

2

36207369

1.27

-

TRUE

-

27

rs2256639

14

68125927

1.27

-

TRUE

RAD51B

28

rs11615811

12

40212891

1.27

-

FALSE

PDZRN4

29

rs17073525

8

5274464

1.26

-

FALSE

-

30

rs719204

20

51997608

1.2

-

FALSE

BCAS1

31

SNP-A-4196610

–

–

1.2

-

FALSE

-

32

rs10741628

11

13851791

1.2

-

TRUE

-

33

rs9820942

3

64535053

1.2

-

TRUE

ADAMTS9

34

rs2063403

2

36082617

1.2

-

TRUE

-

35

rs4413537

5

42681603

1.2

+

TRUE

GHR

36

rs9292856

5

42681023

1.2

+

FALSE

GHR

37

rs7156144

14

67049466

1.19

-

FALSE

TMEM229B,GPHN

38

rs318934

10

131977850

1.16

+

TRUE

LOC107984002

39

rs7607695

2

152607080

1.16

+

TRUE

CACNB4

40

rs7175886

15

31780252

1.16

+

FALSE

RYR3

41

rs433670

16

76173403

1.14

-

FALSE

-

42

rs7278719

21

16607117

1.14

-

FALSE

MIR99AHG

43

rs4716071

6

16541202

1.14

-

FALSE

ATXN1

44

rs6475803

9

2462372

1.14

-

TRUE

LOC101930053

45

rs2322095

18

5439746

1.14

+

TRUE

EPB41L3

46

rs4545261

X

25954300

1.13

+

FALSE

-

47

rs4381121

X

25953702

1.13

+

FALSE

-

48

rs13250548

8

35627942

1.1

-

TRUE

UNC5D

49

rs318931

10

131967734

1.09

+

FALSE

LOC107984002

50

SNP-A-2248670

–

–

1.09

+

TRUE

-