High dimensional model representation of log likelihood ratio: binary classification with SNP data

BMC Medical Genomics

Table 6 Top 25 SNP pairs and their associated risk for the breast cancer dataset

Rank	SNP ID	Gene	Recessive	Value	SNP ID	Gene	Recessive	Value	+/− Risk	Risk
1	rs10045084	-	TRUE	0	rs954035	PRRC2C	TRUE	0	+	3.06
2	rs7731058	DOCK2	TRUE	0	rs17022519	LOC102724960	FALSE	0	+	3.06
3	rs7731058	DOCK2	TRUE	0	rs17022501	LOC102724960	FALSE	0	+	3.06
4	rs2817806	CDK19	FALSE	1	rs949881	CCDC162P	FALSE	0	+	3.06
5	rs2715133	GRB10	TRUE	0	rs12878981	TMEM229B,GPHN	FALSE	1	+	3.06
6	rs151130	-	FALSE	1	rs4075386	LRRK1	TRUE	1	+	3.06
7	rs577743	-	FALSE	0	rs7598745	-	TRUE	0	+	3.03
8	rs17829549	-	FALSE	0	rs2322095	EPB41L3	TRUE	0	+	3.03
9	rs11072625	SCAPER	TRUE	0	rs868978	LOC105376137	FALSE	0	+	3.03
10	rs17762161	-	TRUE	1	rs2322095	rs2322095	TRUE	0	+	3.03
11	rs8106386	ZNF420	TRUE	1	rs981013	PDZRN4	FALSE	0	+	3.03
12	rs9384703	CCDC162P	FALSE	0	rs2691184	-	FALSE	1	+	3.03
13	rs6425603	CEP350	FALSE	0	SNP-A-2020595	-	TRUE	1	+	3.03
14	rs1469369	-	TRUE	1	rs2103788	SLC35F4	TRUE	1	+	3.03
15	SNP-A-2041709	-	FALSE	1	SNP-A-4299911	-	TRUE	1	+	3.03
16	rs17006942	-	TRUE	1	rs6460669	GALNT17	FALSE	1	+	3.03
17	SNP-A-1834818	-	FALSE	0	rs590987	NTNG1	TRUE	0	+	3
18	rs11830382	-	FALSE	0	rs1964337	ZNF66	FALSE	0	+	3
19	rs11020107	-	TRUE	1	rs10732488	-	FALSE	0	+	3
20	rs1687064	PRRC2C	FALSE	1	rs10045084	-	TRUE	0	+	3
21	rs10135394	SLC35F4	TRUE	1	rs934034	-	FALSE	0	+	3
22	rs1469369	-	TRUE	1	rs1028458	SLC35F4	FALSE	0	+	3
23	rs4793993	SNF8	FALSE	1	rs5941729	-	FALSE	0	+	3
24	rs2503675	-	FALSE	1	rs1433062	-	FALSE	0	+	3
25	rs2503675	-	FALSE	1	rs10745023	ZNF699	FALSE	0	+	3

ISSN: 1755-8794