Table 2 Sequencing coverage in 5 sample pairs
From: Quality of whole genome sequencing from blood versus saliva derived DNA in cardiac patients
| Â | Sample Pair 1 | Sample Pair 2 | Sample Pair 3 | Sample Pair 4 | Sample Pair 5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|
Blood | Saliva | Blood | Saliva | Blood | Saliva | Blood | Saliva | Blood | Saliva | |
Mappable mean depth | 36.5x | 33.2x | 34.2x | 33.0x | 37.5x | 34.3x | 37.0x | 31.5x | 36.8x | 22.6x |
Proportion of whole genome with at least 20x coverage for all reads | 96.0% | 94.6% | 95.3% | 94.3% | 93.7% | 85.6% | 93.7% | 89.3% | 93.6% | 63.8% |
Proportion of whole genome with at least 20x coverage for 730 M down-sampled reads | 94.5% | 94.5% | 94.3% | 94.3% | 90.8% | 85.6% | 91.1% | 83.9% | 91.0% | 49.8% |