Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations

BMC Medical Genomics

Table 2 The Cancer Genome Atlas (TCGA) 12 cancers’ statistics. Cancers were sorted based on averaged concordance index in descending order according to Fig. 2

TCGA Cancers	TCGA Cancer Abbreviations	Total Cases	Censored (Living) Group	Uncensored (Deceased) Group	Number of Genes After Pre-processing	Age		Overall Survival Months
TCGA Cancers	TCGA Cancer Abbreviations	Total Cases	Censored (Living) Group	Uncensored (Deceased) Group	Number of Genes After Pre-processing	Median	Range	Median	Range
Kidney	KIRP	286	242	44	17,867	61.5	28–88	25.45	0.00–194.65
Kidney	KIRC	531	357	174	17,870	61	26–90	38.96	0.00–149.05
Liver	LIHC	369	239	130	17,963	61	16–90	19.32	0.00–120.73
Breast	BRCA	1083	933	150	18,030	58	26–90	27.56	0.00–282.69
Cervical	CESC	302	231	71	17,731	46	20–88	20.93	0.00–210.51
Lung	LUAD	495	315	180	17,715	66	38–88	21.55	0.00–238.11
Bladder	BLCA	402	225	177	18,008	69	34–90	17.61	0.43–165.90
Head-Neck	HNSC	514	296	218	17,968	61	19–90	21.46	0.07–210.81
Pancreatic	PAAD	176	83	93	17,150	65	35–88	15.20	0.00–90.05
Ovarian	OV	299	119	180	17,635	58	30–87	31.27	0.30–180.06
Stomach	STAD	397	244	153	18,172	67	30–90	14.03	0.00–122.21
Lung	LUSC	489	283	206	18,030	68	39–90	21.91	0.00–173.69

ISSN: 1755-8794