Table 2 Experimental results for iDASH dataset with 245 samples, each has 10643 SNPs and 3 covariates (4 cores)
From: Semi-Parallel logistic regression for GWAS on encrypted data
Stage | Set-I | Set-II | Set-III | |||
|---|---|---|---|---|---|---|
Key Generation | 4.460 s | 2.321 GB | 6.665 s | 3.584 GB | 9.699 s | 10.721 GB |
Encryption | 7.059 s | 5.406 GB | 7.066 s | 6.669 GB | 23.023 s | 12.137 GB |
Training with covariates | 2.622 s | 7.176 GB | 9.367 s | 7.186 GB | 62.922 s | 12.137 GB |
Training with all SNPs | 40.442 s | 10.339 GB | 42.567 s | 11.176 GB | 108.24 s | 12.137 GB |
Total evaluation | 43.064 s | − | 51.934 s | − | 171.162 s | − |
Decryption | 0.025 s | 10.339 GB | 0.025 s | 11.176 GB | 0.055 s | 12.137 GB |
Reconstruction | 0.794 ms | 10.339 GB | 0.794 ms | 11.176 GB | 2.821 ms | 12.137 GB |