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Table 7 Top* TFBSs enriched in genes upregulated in GE1-HCC

From: Gene networks and transcriptional regulators associated with liver cancer development and progression

ID TRANSFAC

Gene symbol

Yes/no ratio

P

Involvement in cancer types other than HCC

Involvement in HCC

V$AR_03

AR

14.1

2.39E−02

Tumour promoting [23]

Tumour promoting [24]

V$TFIIA_Q6

GTF2A1/GTF2A2

8.5

1.25E−02

General enhancement of gene transcription [25]

V$PR_01

PGR

7.1

5.47E−02

Tumour promoting [26]

Unclear [27]

V$HES1_Q2

HES1

7.1

1.79E−02

Tumour promoting [28]

Unknown

V$ZNF219_01

ZNF219

4.4

3.10E−14

Unknown

Unknown

V$AREB6_03

ZEB1

4

4.24E−03

Tumour promoting [29]

Tumour promoting [30, 31]

V$GCNF_01

NR6A1

3.2

2.99E−02

Tumour promoting [32]

Unknown

V$MAZR_01

PATZ1

2.7

2.16E−50

Tumour promoting [33]

Unknown

V$PAX4_04

PAX4

2.7

3.70E−02

Cell proliferation/survival promoting or tumour suppressing in different contexts [34]

Unknown

V$UF1H3BETA_Q6

UF1-HNF3B (not further identified)

2.6

3.09E−74

V$CACBINDINGPROTEIN_Q6

CAC-binding protein (not further identified)

2.5

1.87E−26

V$MTF1_Q4

MTF1

2.5

3.30E−04

Tumour promoting [35]

Unknown

  1. HCC hepatocellular carcinoma, TFBS transcription factor binding site
  2. *TFBS with Yes/No ratio > 2.5 are included. “Yes” set—promoter sequences of the genes co-regulated in the tumours. “No” set—promoter sequences of the control genes. Yes/No ratio—ratio of the frequencies of TFBSs in the “Yes” gene set and “No” gene set. Yes/No ratio > 1 indicates overrepresentation of TFBS in the co-regulated genes and suggests potential involvement of the corresponding transcription factor in regulation of the observed expression changes