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Table 1 Results of differentially expressed mRNAs and miRNAs from TCGA, and exosomal miRNAs of GSE39833

From: Bioinformatic analysis reveals an exosomal miRNA-mRNA network in colorectal cancer

Compare Style Identification method Log2FC_Cutoff padj_Cutoff All differential expressed Num Up regulated Num Down regulated Num Total Num after merging
Tumor versus normal (TCGA-COADREAD) mRNA limma 1 0.05 5621 2585 3036 6567
edgeR 1 0.05 5921 2881 3040
Tumor versus normal (TCGA-COADREAD) miRNA limma 1 0.05 476 161 315 530
edgeR 1 0.05 502 251 251
Tumor versus normal (GSE39833) Exosomal miRNA limma 1 0.05 79 38 41 165
edgeR 1 0.05 274 244 30