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Table 2 Differentially coexpressed links (DCLs), differentially coexpressed genes (DCGs), and correlation between DCGs and differentially expressed genes (DEGs)

From: Conditional transcriptional relationships may serve as cancer prognostic markers

 

DC analysis results

Survival analysis results

#DCL

#DCG

Maximum p-value of DCLs

GSEA p-value*

#DCL

#DCG

Maximum p-value of DCLs

GSEA p-value*

BRCA

4920

2538

5.3e − 7

N/A

0

0

N/A

N/A

HNSC

13

23

5.2e − 7

0.257

1

2

0.019

0.380

KIPAN

11,549

3950

5.4e − 7

N/A

244

331

2.6e − 5

0.210

KIRC

1213

971

5.3e − 7

N/A

7

11

0.0002

0.436

KIRP

21

34

5.1e − 7

0.930

5

8

0.010

0.071

LIHC

19

29

5.2e − 7

0.070

0

0

N/A

N/A

LUAD

134

173

5.3e − 7

0.823

0

0

N/A

N/A

LUSC

66

85

4.9e − 7

0.227

0

0

N/A

N/A

PRAD

16

27

5.1e − 7

0.303

0

0

N/A

N/A

THCA

13

21

4.9e − 7

0.856

1

2

0.015

0.614

  1. Survival analysis results (DCGs and DCLs) were subsets of DC analysis results that met the criterion of FDR ≤ 0.3 in DCL survival analysis
  2. *Only the cancer types that retrieved at least two DCGs were fed to GSEA analysis, and when the gene number was more than 500 we did not perform a GSEA analysis
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BMC Medical Genomics

ISSN: 1755-8794

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