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Table 2 Differentially coexpressed links (DCLs), differentially coexpressed genes (DCGs), and correlation between DCGs and differentially expressed genes (DEGs)

From: Conditional transcriptional relationships may serve as cancer prognostic markers

  DC analysis results Survival analysis results
#DCL #DCG Maximum p-value of DCLs GSEA p-value* #DCL #DCG Maximum p-value of DCLs GSEA p-value*
BRCA 4920 2538 5.3e − 7 N/A 0 0 N/A N/A
HNSC 13 23 5.2e − 7 0.257 1 2 0.019 0.380
KIPAN 11,549 3950 5.4e − 7 N/A 244 331 2.6e − 5 0.210
KIRC 1213 971 5.3e − 7 N/A 7 11 0.0002 0.436
KIRP 21 34 5.1e − 7 0.930 5 8 0.010 0.071
LIHC 19 29 5.2e − 7 0.070 0 0 N/A N/A
LUAD 134 173 5.3e − 7 0.823 0 0 N/A N/A
LUSC 66 85 4.9e − 7 0.227 0 0 N/A N/A
PRAD 16 27 5.1e − 7 0.303 0 0 N/A N/A
THCA 13 21 4.9e − 7 0.856 1 2 0.015 0.614
  1. Survival analysis results (DCGs and DCLs) were subsets of DC analysis results that met the criterion of FDR ≤ 0.3 in DCL survival analysis
  2. *Only the cancer types that retrieved at least two DCGs were fed to GSEA analysis, and when the gene number was more than 500 we did not perform a GSEA analysis