Table 2 Severity and genetic data associated with SARS-CoV-2 viruses collected from seventeen COVID-19 patients in Yogyakarta and Central Java provinces, Indonesia from June–September 2020
From: Molecular epidemiology of SARS-CoV-2 isolated from COVID-19 family clusters
Patient no. | Sex | Age (yo) | COVID-19 severity | CT value | Virus name (GISAID Accession ID) | Average coverage | Collection date | Lineage (GISAID clade) | Spike mutations |
|---|---|---|---|---|---|---|---|---|---|
1 | Male | 30 | Mild | 27.9 | hCoV19/Indonesia/YO-UGM-200927/2020 (EPI_ISL_516806) | 102x | 16/05/2020 | L | - |
2 | Female | 49 | Asymptomatic | 22.31 | hCoV-19/Indonesia/YO-UGM-00061/2020 (EPI_ISL_575331) | 4655x | 16/06/2020 | GH | D614G |
3 | Male | 77 | Moderate | 19.7 | hCoV19/Indonesia/YO-UGM-202449/2020 (EPI_ISL_516800) | 22088x | 22/06/2020 | GH | D614G |
4 | Female | 55 | Moderate | 24.7 | hCov19/Indonesia/JT-UGM-202538/2020 (EPI_ISL_525492) | 347x | 26/06/2020 | GH | D614G |
5 | Male | 28 | Asymptomatic | 21.05 | hCoV-19/Indonesia/YO-UGM-107727/2020 (EPI_ISL_576145) | 104x | 30/07/2020 | GR | D614G |
6 | Female | 83 | Moderate | 16.9 | hCoV19/Indonesia/YO-UGM-781481/2020 (EPI_ISL_516829) | 3748x | 10/08/2020 | GH | D614G |
7 | Male | 28 | Critical | 20 | hCoV-19/Indonesia/YO-UGM-10002/2020 (EPI_ISL_576114)* | 13x | 13/08/2020 | GH | V213A, D614G |
8 | Male | 58 | Critical (Died) | 23 | hCoV-19/Indonesia/YO-UGM-10003/2020 (EPI_ISL_576115)* | 505x | 16/08/2020 | GH | V213A, D614G |
9 | Male | 88 | Critical (Died) | 18.1 | hCoV-19/Indonesia/YO-UGM-10001/2020 (EPI_ISL_576113)* | 42888x | 18/08/2020 | GH | V213A, D614G |
10 | Male | 8 | Moderate | 19.5 | hCoV-19/Indonesia/YO-UGM-10006/2020 (EPI_ISL_576130)** | 26x | 18/08/2020 | GH | L5F, D614G |
11 | Male | 35 | Mild | 32 | hCoV-19/Indonesia/YO-UGM-10004/2020 (EPI_ISL_576116)** | 45x | 20/08/2020 | GH | D614G |
12 | Female | 33 | Mild | 22 | hCoV-19/Indonesia/YO-UGM-10005/2020 (EPI_ISL_576128)** | 106x | 21/08/2020 | GH | L5F, D614G |
13 | Female | 52 | Asymptomatic | 18 | hCoV-19/Indonesia/YO-UGM-10007/2020 (EPI_ISL_632936) | 2207x | 22/08/2020 | GH | D614G, N811I |
14 | Male | 48 | Moderate | 19.64 | hCoV-19/Indonesia/JT-UGM-47964/2020 (EPI_ISL_610162) | 6291x | 31/08/2020 | O | W258R, D614G |
15 | Male | 36 | Mild | 17.53 | hCoV-19/Indonesia/JT-UGM-47906/2020 (EPI_ISL_576383) | 653x | 01/09/2020 | GR | D614G |
16 | Female | 64 | Moderate | 19.44 | hCoV-19/Indonesia/JT-UGM-48660/2020 (EPI_ISL_610161) | 22x | 01/09/2020 | GH | V213A, D614G |
17 | Male | 41 | Mild | 21.24 | hCoV-19/Indonesia/YO-UGM-48651/2020 (EPI_ISL_632937) | 2867x | 09/09/2020 | GH | V83L, D614G, Q677H |