From: Sex-specific recombination patterns predict parent of origin for recurrent genomic disorders
Locus | CNV type | BED coordinates [7] | # Samples (%) | M:F origin countsa | Del/dup counts | Avg. male recombination rate [106]b | Avg. female recombination rate [106]b | Loge M:F recombination ratio [106]c |
---|---|---|---|---|---|---|---|---|
1q21.1 | Del/Dup | chr1:147101794–147921262 | 9 (0.46%) | 6:3 | 7/2 | 0.12331689 | 0.50839541 | − 1.416626 |
1q21.1 TAR | Del | chr1:145686999–146048495 | 1 (0.05%) | 1:0 | 1/0 | 0.15712388 | 0.77814863 | − 1.599883 |
2q13 | Dup | chr2:110625954–112335952 | 1 (0.05%) | 1:0 | 0/1 | 0.44854539 | 1.64377881 | − 1.298743 |
3q29 | Del | chr3:195988732–197628732 | 22 (1.11%) | 21:1 | 22/0 | 3.1305211 | 0.27775988 | 2.422197 |
5q35 | Del | chr5:176290391–177630393 | 41 (2.07%) | 36:5 | 41/0 | 1.29955355 | 0.97941355 | 0.282822 |
7q11.23 | Del/Dup | chr7:73328061–74727726 | 618 (31.26%) | 296:322 | 598/20 | 0.49353554 | 1.92657023 | − 1.361890 |
8p23.1 | Del/Dup | chr8:8235068–12035082 | 3 (0.15%) | 1:2 | 1/2 | 0.67201752 | 1.81857951 | − 0.995527 |
11q13.2q13.4 | Del | chr11:67985953–71571306 | 1 (0.05%) | 0:1 | 1/0 | 0.8431765 | 2.23501635 | − 0.974828 |
15q13.3 | Del/Dup | chr15:30840505–32190507 | 6 (0.30%) | 5:1 | 5/1 | 1.63640726 | 1.89901039 | − 0.148828 |
15q24 AC | Del | chr15:72670606–75240606 | 1 (0.05%) | 1:0 | 1/0 | 0.28479919 | 0.86129537 | − 1.106653 |
15q24 AD | Del | chr15:72670606–75720604 | 3 (0.15%) | 1:2 | 3/0 | 0.27613544 | 0.82152961 | − 1.090277 |
15q24 BD | Del | chr15:73720606–75720604 | 1 (0.05%) | 0:1 | 1/0 | 0.30739967 | 0.68432207 | − 0.800280 |
15q24 BE | Del | chr15:73720606–77840603 | 2 (0.10%) | 0:2 | 2/0 | 0.23485125 | 0.72623183 | − 1.128917 |
15q25.2 | Del | chr15:82513967–84070244 | 5 (0.25%) | 0:5 | 5/0 | 0.21225081 | 0.32633295 | − 0.430177 |
16p11.2 | Del/Dup | chr16:29641178–30191178 | 98 (4.96%) | 11:87 | 79/19 | 0.06570935 | 1.28740565 | − 2.974798 |
16p11.2 distal | Del/Dup | chr16:28761178–29101178 | 4 (0.20%) | 0:4 | 3/1 | 0.12150949 | 1.61662624 | − 2.600350 |
16p11.2p12.1 | Dup | chr16:21341178–29431178 | 1 (0.05%) | 1:0 | 0/1 | 0.5534655 | 2.68382469 | − 1.578799 |
16p13.11 | Del/Dup | chr16:15408642–16198642 | 2 (0.10%) | 1:1 | 1/1 | 1.67072378 | 2.46524529 | − 0.389038 |
17p11.2 | Del/Dup | chr17:16805961–20576095 | 71 (3.59%) | 44:27 | 59/12 | 0.1888066 | 1.19115966 | − 1.841959 |
17q11.2 | Del | chr17:30838856–31888868 | 62 (3.14%) | 10:52 | 62/0 | 0.26024285 | 1.85442774 | − 1.963716 |
17q12 | Del | chr17:36460073–37846263 | 6 (0.30% | 4:2 | 6/0 | 0.64750654 | 3.64754421 | − 1.728720 |
17q21.31 | Del/Dup | chr17:45626851–46106851 | 39 (1.97%) | 19:20 | 35/4 | 0.38234179 | 0.98304273 | − 0.944338 |
17q23.1q23.2 | Del | chr17:59987857–62227857 | 2 (0.10%) | 0:2 | 2/0 | 0.56466054 | 1.30765625 | − 0.839748 |
22q11.2 | Del | chr22:18924718–21111383d | 978 (49.47%) | 411:567 | 978/0 | 1.45946494 | 3.69205976 | − 0.920692 |
All | Del/Dup | – | 1977 (100%) | 870:1107 | 1913/64 | – | – | – |