Table 4 Overview of Sendai virus in pangolins’ lung samples
From: Rapid screening and identification of viral pathogens in metagenomic data
Sample ID | Host % | Virus % | FastViromeExplorer + BWA (n = 3) | FastViromeExplorer (n = 3) | BWA (n = 3) | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Time | SD | cov. % | #. SNV | Time | SD | cov. % | #. SNV | Time | SD | cov. % | #. SNV | |||
Lung01 | 8.09 | 1.49 | 0m21s | 0m16s | 0 | 0 | 0m6s | 0m0.2 s | 53.66 | 222 | 16m8s | 3m28s | 1.94 | 0 |
Lung02 | 19.25 | 3.67 | 0m21s | 0m5s | 6.37 | 0 | 0m21s | 0m1s | 72.2 | 861 | 43m57s | 10m30s | 10.47 | 4 |
Lung03 | 8.32 | 2.16 | 0m34s | 0m17s | 0 | 0 | 0m7s | 0m1s | 22.19 | 23 | 16m25s | 1m14s | 0 | 0 |
Lung04 | 12.29 | 2.23 | 0m18s | 0m20s | 8.66 | 6 | 0m5s | 0m0.1 s | 75.27 | 915 | 9m31s | 1m2s | 9.91 | 6 |
Lung07 | 9.09 | 0.63 | 1m21s | 0m30s | 5.67 | 0 | 0m22s | 0m3s | 61.76 | 469 | 56m48s | 7m15s | 5.88 | 9 |
Lung08 | 11.07 | 0.67 | 0m43s | 0m26s | 5.16 | 0 | 0m19s | 0m2s | 72.07 | 743 | 25m46s | 3m38s | 7.36 | 0 |
Lung09 | 8.03 | 0.31 | 0m22s | 0m4s | 9.06 | 0 | 0m5s | 0m0.2 s | 74.32 | 957 | 30m9s | 2m41s | 9.33 | 0 |
Lung11 | 9.32 | 0.69 | 0m47s | 0m39s | 0.97 | 0 | 0m5s | 0m1s | 18.65 | 31 | 23m5s | 3m11s | 0.97 | 0 |
Lung12 | 6.82 | 1.03 | 0m1s | 0m0.1 s | NA | NA | 0m2s | 0m1s | NA | NA | 0m0.1 s | 0m0.05 s | NA | NA |
Lung13 | 21.76 | 4.47 | 0m21s | 0m19s | NA | NA | 0m13s | 0m1s | NA | NA | 10m22s | 1m39s | NA | NA |
Lung19 | 7.47 | 3.82 | 0m23s | 0m2s | 13.23 | 7 | 0m14s | 0m1s | 87.86 | 1013 | 47m59s | 4m1s | 14.5 | 7 |